Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1804
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    28   1.2  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.0  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.5  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    27   3.5  
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    25   8.1  

>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -3

Query: 533 IVYLFVFIHSRSFFCSLIQNCLTFQMVYE*LSGTQDNFIPNKNTQA---QVPPLRTLL 369
           ++YL  F    S+  S  Q  L ++ +Y+     Q N I N+N QA    VP +R+L+
Sbjct: 4   LLYLRTFSTHTSYLRSSWQAILNYKYIYQNAEAVQRNCI-NRNLQAIAETVPKIRSLI 60


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 144 LSYYCFSHINCVCWCW 97
           LSY CFS +  +C CW
Sbjct: 146 LSYICFSSLIRICHCW 161


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 87  TQHSNTNIHN*YVRNNNKRDVPDYLF 164
           T HS+T   + Y +NN   D PD LF
Sbjct: 32  TSHSSTATSSHYSKNNLPSDSPDLLF 57


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -3

Query: 581 RFSNYSLVFRKSVQR-NIVYLFVFIHSRSFFCSLIQNCLTFQMVYE*LSGTQDNFIPNKN 405
           R+ N  L   +++   NI+ L  F H+ +        CL  + + E +    D+      
Sbjct: 61  RYKNRELQIMRAISHPNIIKLIAFFHTHNPSKDETHLCLLLEYMPETVF---DDMRWYTR 117

Query: 404 TQAQVPPLRTLLYTFKLFR 348
            +  +P L   LY F+LFR
Sbjct: 118 RRKSIPNLSIKLYAFQLFR 136


>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 439 QGHKIILFQTKILRPRYHHYEHCFILSS 356
           Q H I  F+T I   R+ H++H  +LS+
Sbjct: 56  QVHTITCFETGIEVARFTHHDHNLLLST 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,245
Number of Sequences: 5004
Number of extensions: 50570
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)