Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1804
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.8  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -2

Query: 531 CIFICIYTFQVIF--LFINSKLFNISN 457
           CIFI  Y   +IF  LF +  L +I N
Sbjct: 223 CIFIWAYVIPLIFIILFYSRLLSSIRN 249


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 621 KDKCPYTIPLSSFEVF*LFTCVQKIGTKK 535
           KD     IP+S       + C++K+G K+
Sbjct: 51  KDSAVKGIPVSCISGRDRYECIEKVGKKE 79


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 621 KDKCPYTIPLSSFEVF*LFTCVQKIGTKK 535
           KD     IP+S       + C++K+G K+
Sbjct: 51  KDSAVKGIPVSCISGRDRYECIEKVGKKE 79


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 621 KDKCPYTIPLSSFEVF*LFTCVQKIGTKK 535
           KD     IP+S       + C++K+G K+
Sbjct: 51  KDSAVKGIPVSCISGRDRYECIEKVGKKE 79


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -2

Query: 531 CIFICIYTFQVIF--LFINSKLFNISN 457
           CIFI  Y   +IF  LF +  L +I N
Sbjct: 223 CIFIWAYVIPLIFIILFYSRLLSSIRN 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,075
Number of Sequences: 438
Number of extensions: 4009
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)