Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1803
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    31   0.16 
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    29   0.36 
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.5  
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...    25   7.8  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   7.8  

>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
 Frame = -1

Query: 446 KMKGSSIVNHLT-QVPDVNESDLYPYLLKVLKQLKLDEKKENTPDAINGGSVLASVTPNA 270
           K   SS  + +T ++ D+N + + PYL K+ ++L  D +       +N   +   V+   
Sbjct: 268 KFSLSSSSSQITKEIRDINFNCIGPYLSKIARKLSSDFEGRRQAKTVN--QIRDFVSKLG 325

Query: 269 ALTAGRLPRAVHEELALILKRIGSKEHHKEALVQLYDLRVSSA 141
           +L +      +H  LA  L +  +K ++ + L+QL  L VS A
Sbjct: 326 SLQSEHTSLNIHTGLAETLVQ-HTKNNYFQKLLQLQHLLVSHA 367


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
 Frame = -1

Query: 467 TLVHTLVKMKGSSIVNHLTQVPDVNESDLYPYLLKVLKQLKLDEKKENTPDAINGGSVLA 288
           +L+   + +  S I  H  +V  +N   L PY L + KQ++     E T DA      L+
Sbjct: 3   SLLRKAIDVNRSRITLHGIKVHSINTFRLIPYSLSLTKQIRF-YASEGT-DAGEMEKGLS 60

Query: 287 SVTPNAALTAGRLPRAVHEELALILKRI---GSKEHHKEALVQLYDLRVSSAL*HSGIH 120
            V  N      R     H      LK +   G  E   E L+++ ++ V+  L HS ++
Sbjct: 61  VVNANHENRPFRDLEGYHFNTFTFLKTLMDKGYTEKEAEGLLEVTNMFVTDMLRHSHLN 119


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 563 WLYKIHLFYKAYPNSFW 513
           WLY++++ YK Y + F+
Sbjct: 23  WLYEVYMLYKTYTSYFF 39


>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = +1

Query: 397 TSGTWVRWFTIEEPFILTRVCTNVFTVLYGVSLISR 504
           T   W RW  I  P        N F  + G   +SR
Sbjct: 56  TGAIWTRWSLIVRPKNYFNATVNFFLAIVGAVQVSR 91


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 492 RYAIQDSENIGTYSSQNERLFDSEPSHPGS 403
           RY++++ +   +   +NE+L D  P+ P S
Sbjct: 624 RYSLKERDFFRSLVQENEKLLDMAPATPNS 653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,863
Number of Sequences: 5004
Number of extensions: 36660
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)