Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1803
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998... 51 7e-07
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 33 0.21
11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910 31 0.49
11_01_0719 - 5924088-5924362,5924458-5924605 31 0.85
02_05_1353 + 35866130-35866297,35866438-35868762 30 1.1
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050 29 2.6
02_05_1302 + 35567585-35567848,35568303-35568368,35568475-355685... 29 3.4
08_02_0142 + 13137905-13138215,13138300-13138561,13138574-131387... 28 4.6
07_03_1555 - 27669981-27670148,27670232-27670315,27670349-276703... 28 4.6
04_04_0802 - 28155281-28155725,28155750-28156081,28156164-281562... 28 6.0
04_04_0150 - 23130038-23130281,23130550-23130762,23130856-23133155 28 6.0
03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,426... 28 6.0
01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296 28 6.0
03_02_0574 + 9575496-9575517,9575636-9576418,9576754-9577163,957... 27 8.0
>01_06_1127 - 34699119-34699360,34699446-34699689,34699773-34699844,
34700123-34700218,34700322-34700438,34700520-34700676,
34700770-34700867,34700940-34701098,34701169-34701339,
34701402-34701479,34701548-34701667,34701968-34702085,
34702216-34702346,34702452-34702528,34702858-34702969,
34703057-34703239,34703416-34703517,34703617-34703718,
34703817-34703912,34704481-34704558,34704652-34704744,
34704817-34704938,34705035-34705116,34705204-34705278,
34705385-34705645,34705730-34705854,34705956-34706031,
34706128-34706277,34706359-34706454,34706707-34706814,
34706956-34707056,34707727-34707814,34707894-34708006,
34708278-34708383,34709143-34709247,34709356-34709427,
34709931-34709971,34710067-34710175,34710252-34710317,
34710404-34710540,34710788-34710890,34711416-34711535,
34711707-34711820,34711923-34712008,34712088-34712170,
34713283-34713347,34713444-34713621,34713697-34713776,
34714926-34715049,34715140-34715245,34715399-34715561
Length = 1966
Score = 50.8 bits (116), Expect = 7e-07
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Frame = -1
Query: 560 LYKIHLFYKAYPNSFWKKNLDISDTPYRTVKTLVHTLVKMKGSSIVNHLTQVPDVNESDL 381
L IH++ + ++ D P R VKT++H LVK++G++I HL+ VP +++
Sbjct: 1640 LQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVP--IDAEP 1697
Query: 380 YPYLLKV--LKQLKLDEKKENTPDAINGGSVLASVTPNAALTAGRLPRA-VHEELALILK 210
P +L L L + TP G + N + A + +ELA + K
Sbjct: 1698 QPIILAYIDLNLQTLAAARMLTPSGTMGQTHWGDAGSNNPNPSTHSTDAQLKQELAAVFK 1757
Query: 209 RIGSKEHHKEALVQLY 162
+IG K+ L +LY
Sbjct: 1758 KIGDKQTCTIGLYELY 1773
>07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -1
Query: 461 VHTLVKMKGSSIVNHLTQVPDVNESDLYPYLLKVLKQLKLDEKKENTPDAINGGS 297
+ TL++ SS+V++ ++ + +L+ YL QL + + TP+A NGGS
Sbjct: 1217 ISTLIESSLSSVVDYRLKIQGLQ--NLFEYLRDAESQLNAESTGKPTPNATNGGS 1269
>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
Length = 1155
Score = 31.5 bits (68), Expect = 0.49
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 384 VRFV-DVRNLGEMVHYRRAFHFD*SMYQCFHCPVWRIAYIKILLPKAIRISLIE 542
VRFV D+ LGE++ F+ Y C P W + I LP +R+++++
Sbjct: 794 VRFVEDIELLGEIIPPTNLMEFEIHGYNCTKFPAWLMG-IAPYLPNLVRLTMMD 846
>11_01_0719 - 5924088-5924362,5924458-5924605
Length = 140
Score = 30.7 bits (66), Expect = 0.85
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 202 PMRLRMRASSSCTARGRRPAVSAALGVTDARTEPP 306
P+R+ +RAS S T G P+ +AA D + PP
Sbjct: 46 PLRIVVRASGSGTGGGASPSATAAAAAGDDASTPP 80
>02_05_1353 + 35866130-35866297,35866438-35868762
Length = 830
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +1
Query: 4 FSITLVGRRAYGPPDGERLPSLMDFS 81
FSI +VG AYG PDG+ PS D S
Sbjct: 205 FSIMVVGTTAYG-PDGQPTPSFPDMS 229
>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
Length = 478
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/35 (48%), Positives = 17/35 (48%)
Frame = -1
Query: 128 GIHT*AGSGKALPLALLKSMSDGNRSPSGGPYARL 24
GI AGS A L LL M PSG YARL
Sbjct: 58 GIQHHAGSDLASSLRLLADMQAAGLRPSGAAYARL 92
>02_05_1302 +
35567585-35567848,35568303-35568368,35568475-35568573,
35569028-35569061,35569147-35569246,35569738-35569813,
35569974-35570315,35570426-35570569,35570840-35571073,
35571149-35571212,35571297-35571340,35571431-35571601
Length = 545
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 400 SGTWVRWFTIEEPFILTRVCTNVFTVLYGVSLISRFF 510
SG W +WF PF++TR C + L L++ F
Sbjct: 183 SGNWHKWF----PFLMTRACCEACSNLKAAFLVAVVF 215
>08_02_0142 +
13137905-13138215,13138300-13138561,13138574-13138712,
13138922-13139011,13139561-13140090
Length = 443
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 230 ELALILKRIGSKEHHKEALVQLYDLRVSSAL*HSG 126
+L L++KR+ E E V+ +D V ++ HSG
Sbjct: 166 KLDLVMKRLDGHEKRPEGTVKAFDSHVCGSMGHSG 200
>07_03_1555 - 27669981-27670148,27670232-27670315,27670349-27670360,
27670683-27670761,27670840-27671078,27671167-27671260,
27671342-27671484,27671688-27671786,27671870-27671998,
27672123-27672197,27672308-27672520,27672581-27672676,
27673282-27673380,27673600-27673839,27674212-27674322,
27674429-27674626,27674720-27674835,27675076-27675193,
27675761-27675866,27675972-27676030,27676259-27676388,
27676730-27676887,27677672-27677887,27677972-27678082,
27678313-27678472,27679364-27679509,27679603-27679695,
27680610-27680706,27681224-27681294,27681407-27681505,
27682037-27682168,27682287-27682729,27683252-27683564,
27684301-27684549
Length = 1631
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -1
Query: 368 LKVLKQLKLDEKKENTPDAINGGSVLASVTPN---AALTAGRLPRAVHEELALILKRIGS 198
+ VL+ L L+ K + P I S+ ++ G + R HE +A+ + RIG
Sbjct: 938 VNVLRDL-LELKSDRAPIPIGKVEPATSIVERFCTGGMSLGAISRETHEAIAIAMNRIGG 996
Query: 197 KEHHKE 180
K + E
Sbjct: 997 KSNSGE 1002
>04_04_0802 -
28155281-28155725,28155750-28156081,28156164-28156266,
28156347-28156528,28156617-28156800,28156872-28156960,
28157634-28157710,28157837-28157927,28158230-28158430
Length = 567
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -1
Query: 521 SFWKKNLDISDTPYRTVKTLVHTLVKMKGSSIVNHLTQVPDVNESDLYPYLLKV 360
SFWK D +D V++ + +L S+ V + QVPD N YPY +++
Sbjct: 147 SFWKDASDFADI--FDVESFISSL-----SNDVKIIRQVPDRNGKTPYPYKMRI 193
>04_04_0150 - 23130038-23130281,23130550-23130762,23130856-23133155
Length = 918
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/59 (35%), Positives = 26/59 (44%)
Frame = +1
Query: 142 ALLTLKS*SCTSASLWCSLLPMRLRMRASSSCTARGRRPAVSAALGVTDARTEPPLIAS 318
A L + C A LW SLL R R +S + RR S G +R PL+AS
Sbjct: 60 AALAFAASPCPDAFLWNSLLRSRHRASDFASTLSAHRRMRAS---GARPSRFTAPLVAS 115
>03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,
4262554-4262718,4262811-4263178,4263225-4263861,
4263952-4265844,4266325-4266672
Length = 1482
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +1
Query: 148 LTLKS*SCTSASLWCSLLPMRLRMRASSSCTARGRRPAVSAALGVTDARTEPPLIASG 321
LTL + +CT +L S L + + + A S A R ++A V++ RT L A G
Sbjct: 1057 LTLVATACTPLTLGASYLNLLINVGARSDDGAYARASGIAAG-AVSNVRTVAALCAQG 1113
>01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296
Length = 416
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 398 VNESDLYPYLLKVLKQLKLDEKKENTPDA-INGGSVLASVTPNAALTAGRLPR 243
V+ + + P+L K L +K P I+GGS+ A VTP + R PR
Sbjct: 207 VDGNPILPWL-KTLSNSPSSKKHPQLPPLLIHGGSISAPVTPPLSSPTARTPR 258
>03_02_0574 +
9575496-9575517,9575636-9576418,9576754-9577163,
9577246-9578079
Length = 682
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = -1
Query: 485 PYRTVKTLVHTLVKMKGSSIVNHLTQVPDVNESDL---YPYLLKVLKQLKLDEKKENTPD 315
P R +H + K S IVN L +PD+N + L + + L L E+ D
Sbjct: 387 PDRNGNLALHVATRKKRSEIVNELLLLPDMNVNALTRDRKTAFDIAEGLPLSEESAEIKD 446
Query: 314 AIN-GGSVLAS 285
++ G+V A+
Sbjct: 447 CLSRAGAVRAN 457
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,502,505
Number of Sequences: 37544
Number of extensions: 279789
Number of successful extensions: 945
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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