Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1803
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.70 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   6.5  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
 Frame = -1

Query: 557 YKIHLFYKAYPNSFWKKNLD-------ISDTPYRTVKTLVHT--LVKMKGSSIVNHLTQV 405
           +K  +FY+ YP SF   N D       I D     +++ +    L  +  S +V+    +
Sbjct: 25  WKNAIFYQVYPRSFMDSNSDGIGDLKGIKDKLSHFIESGITAIWLSPINRSPMVDFGYDI 84

Query: 404 PDVNESDLYPYLLKVLKQLKLDEKKEN 324
            D  + D     +K L+ L  + KK+N
Sbjct: 85  SDFKDVDPIFGTIKDLEDLTAEAKKQN 111


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 530 YPNSFWKKNLDISDTPYRTVKTLVH 456
           Y    WKKNL++ D+     K L+H
Sbjct: 89  YLGKEWKKNLNLRDS---VTKYLIH 110


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
 Frame = -1

Query: 554 KIHLFYKAYPNSFWKK----NLDISDTP 483
           +++  YK+YPN   K+    NL+IS  P
Sbjct: 449 QLNRMYKSYPNYIDKETKDMNLEISTRP 476


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/27 (22%), Positives = 15/27 (55%)
 Frame = -1

Query: 356 KQLKLDEKKENTPDAINGGSVLASVTP 276
           + + +D++K+N  + + GG      +P
Sbjct: 3   RSINMDQEKKNNVENLKGGGSTTPASP 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,298
Number of Sequences: 438
Number of extensions: 2841
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)