Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1802
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.22
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 29 0.51
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar... 29 0.51
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 28 1.2
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 27 2.7
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 27 2.7
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 25 8.4
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 8.4
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.22
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +2
Query: 47 TVASIRISVPITPVFQSLPPATIFTNVI*LPSTTSCST-RPKKPVPYSKFTH*EAFSTNT 223
T S +S PITP ++PP + + I +P T++ ST P+P + + ST+
Sbjct: 237 TGGSSSLSTPITP---TVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSC--TTSTSI 291
Query: 224 *SLGKTTSRPSRQLP*TVKTTASTNCKPVCT 316
G +T+ + +P T ++ ST P T
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPAST 322
Score = 26.6 bits (56), Expect = 3.6
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +2
Query: 47 TVASIRISVPITPVFQSLPPATIFTNVI*LPSTTSCST-RPKKPVPYSKFTH*EAFSTNT 223
T S +S PITP ++PP + + I +P T++ ST P+P + + ST+
Sbjct: 124 TGGSSSLSTPITP---TVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSC--TTSTSI 178
Query: 224 *SLGKTTSRPSRQLP*TVKTTASTNCKPV 310
G ++S + P T+ S+ P+
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPI 207
Score = 26.2 bits (55), Expect = 4.8
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +2
Query: 47 TVASIRISVPITPVFQSLPPATIFTNVI*LPSTTSCST-RPKKPVPYSKFTH*EAFSTNT 223
T S +S PITP ++PP + + I +P T++ ST P+P + + + S T
Sbjct: 181 TGGSSSLSTPITP---TVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPT 237
Query: 224 *SLGKTTSRPSRQLP*TVKTTASTNCKPVCT 316
++ + +P T ++ S P T
Sbjct: 238 GGSSSLSTPITPTVPPTSTSSTSIPIPPTST 268
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 29.5 bits (63), Expect = 0.51
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 219 THNPSERPPADHQGNYHEQSKQQHQQTVNQFVPNGGELVPSISEYEQH 362
THNP+ P D G + + + T N P+ E + S + ++H
Sbjct: 1037 THNPTVTQPTDDTGGLNSYNTENPLLTNNTLEPSSVEAIVSSKDSDKH 1084
>SPAC23G3.07c |snf30||SWI/SNF complex subunit
Snf30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 29.5 bits (63), Expect = 0.51
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 214 NKHIIPRKDHQQTIKATTMNSQNNSINKL*TSLY 315
N H IP + QT AT+M NN+ +K T Y
Sbjct: 196 NSHNIPDPNLSQTFSATSMGPPNNNYSKFRTDNY 229
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 147 LPVAQDPKSQ-FHIQNSPTERPFQQTHNPSERPPADHQGN 263
LP A D K H PTER + T+NP +P D N
Sbjct: 472 LPYAPDMKIYCVHGVGKPTERGYYYTNNPEGQPVIDSSVN 511
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 129 YNFHQQLPVAQDPKSQFHIQNSPTERPFQQTHNPSERPP 245
YN Q +P S H+++ P P Q H+P RPP
Sbjct: 139 YNPQVQSYCRPEPLSSNHVRSCPPFPPTQH-HHPHTRPP 176
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 88 LPIPSSRNHLHQRYITSINNFL*HKTQKASSIFKIHPLRGLF 213
LP P++ + + + +N L +QKASS KI+P + F
Sbjct: 48 LPTPNAEYYSTSKLSSQVNVSLNSLSQKASSGSKIYPFKNSF 89
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/65 (16%), Positives = 32/65 (49%)
Frame = +3
Query: 162 DPKSQFHIQNSPTERPFQQTHNPSERPPADHQGNYHEQSKQQHQQTVNQFVPNGGELVPS 341
DP+ +I+ S + + NPSE+ +D + + ++ ++ + + +G + +P
Sbjct: 338 DPEPLKYIKGSDASNVYDEEINPSEQEFSDDEAEVAAKQLKKKRKRKAKSMVSGNQALPG 397
Query: 342 ISEYE 356
+ ++
Sbjct: 398 EANFQ 402
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 49 RRFNSDQCPHHPRLPIPSSRNHLHQRYITSINNF 150
RR S P HP P+P + + +++ + T N+F
Sbjct: 263 RRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKNDF 296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,077
Number of Sequences: 5004
Number of extensions: 42935
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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