Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1802
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 29 2.9
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898... 29 2.9
01_05_0421 + 21990034-21990392,21991691-21992681 29 3.8
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 29 5.0
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357... 29 5.0
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 5.0
03_02_0676 + 10337085-10337565,10337675-10337920,10338074-10338132 28 6.6
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 28 6.6
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348... 28 6.6
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 28 8.7
06_01_0715 - 5193648-5193897,5193987-5194255,5195011-5195350,519... 28 8.7
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 28 8.7
03_02_0333 + 7566644-7566995,7567432-7567463,7568301-7568457,756... 28 8.7
>11_04_0364 -
16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 191 FTH*EAFSTNT*SLGKTTSRPSRQLP*TVKTTASTNCKPVCTKRWR 328
FT + N +G + + + LP +KT AS C C +RW+
Sbjct: 316 FTVDNGNTPNLQEIGMSIVKKCKGLPLAIKTLASMLCYETCEQRWK 361
>06_01_1096 -
8988463-8989167,8989335-8989361,8989560-8989648,
8989830-8990039,8990877-8991047,8991595-8991777,
8991886-8991969,8992067-8992178
Length = 526
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 153 VAQDPKSQFHIQNS-PTERPFQQTHNPSERPPADHQGNYHEQSKQQHQQ 296
+ ++P+ H+++ P + H P ++P Q YH+Q QQH+Q
Sbjct: 408 MTKEPEKVHHVRHGRPYFNGWDMQHAPQQQP---EQQMYHQQHLQQHRQ 453
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 129 YNFHQQLPVAQDPKSQFHIQNSPTERPFQQTHNPSERPPADHQGNYHEQSKQQHQQTVNQ 308
++ H QL + P H + + + QQ H+ + + HQ H+Q +QQ QQ V Q
Sbjct: 159 HHHHHQLLFSPPPVMAHHQELAALQEQQQQQHH-QDVMQSPHQ---HQQQQQQRQQLVQQ 214
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 82 PRLPIPSSRNHLHQRYITSINNFL*HKTQKASSIFKIH 195
PR PI S R H+H T + F KT K +S+ IH
Sbjct: 85 PRFPISSDRAHVHSLAFTWHDAF---KTGKKASVASIH 119
>10_01_0326 +
3574129-3574329,3575144-3575692,3575914-3576072,
3576349-3577543,3577626-3577762,3578052-3578242,
3578888-3579218
Length = 920
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 138 HQQLPVAQDPKSQFHIQNSPTERPFQQTHNPSERPPADHQGNYHEQSKQQHQQTVNQ 308
H+Q+P Q + + Q+ +Q H P + P D + +Q +QQ Q V Q
Sbjct: 441 HKQMPNEQQQQHRLDEQHQ------RQDHQPKQNHPHDELQHQKQQPEQQQQDQVQQ 491
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 141 QQLPVAQDPKSQFHIQNSPTERPFQQTHNPSERPPADHQGN 263
QQ+ AQ P+S+ H Q S RP P+ P A+ N
Sbjct: 195 QQVRAAQQPQSRHHQQPSGGSRPAVTATRPAAAPNAERFEN 235
>03_02_0676 + 10337085-10337565,10337675-10337920,10338074-10338132
Length = 261
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 121 GEDGCGRKGLEDGGDGDTDPN*SDGLE-DGKG 29
G DG G E+GG+GD D N G+E DG G
Sbjct: 55 GADGSGGAE-EEGGEGDGDVNVGGGVETDGDG 85
>02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 141 QQLPVAQDPKSQFHIQNSPTERPFQQTHNPSERPPADHQGNYHEQSKQQHQ 293
+QLPV P+ + P QQ H+P + Q YH Q+ Q Q
Sbjct: 984 RQLPVPPTPQQP--LPPPPPPPSLQQLHHPYQHQQQQQQQLYHHQNALQPQ 1032
>02_01_0485 +
3487578-3487635,3488281-3488399,3488600-3488698,
3488795-3488851,3488954-3489109,3489227-3489311,
3489489-3489579,3489693-3489857,3489923-3490045,
3490244-3490319,3490486-3490633,3490769-3491934,
3492041-3492231,3492321-3492513
Length = 908
Score = 28.3 bits (60), Expect = 6.6
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +3
Query: 138 HQQLPVAQDPKSQFHIQNSPTERPFQQTHNPSERPPADHQGN-YHEQSKQQHQQTVNQFV 314
H Q Q P H Q+ ++P Q P ++ HQ H+Q +QQ + Q V
Sbjct: 508 HSQPEYLQQPLQ--HCQSFNEQKPQLQ---PQQQQQESHQQQPQHQQMQQQKHLSNFQTV 562
Query: 315 PNGGELVPSISEYEQHITLNGPTASP 392
PN + +S Q T SP
Sbjct: 563 PNALSVFSQLSSTPQSTPSTLQTVSP 588
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 141 QQLPVAQDPKSQFHIQNSPTERPFQQTHNPSERPP 245
QQ P P+ H Q+ T +P Q H ++PP
Sbjct: 181 QQQPSQLHPQQLLHPQSQQTPQPQPQVHPQPQQPP 215
>06_01_0715 -
5193648-5193897,5193987-5194255,5195011-5195350,
5195691-5195845,5196547-5196557,5197632-5197689,
5197855-5198004,5198074-5198169,5198398-5198818,
5198835-5198950,5199041-5199149,5199483-5199532,
5200936-5201004,5201366-5201459,5201550-5201820,
5202273-5202607,5202718-5202786,5202834-5202904
Length = 977
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -2
Query: 156 LQEVVDGSYITLVKMVAGGRDWKTGVMGTLIRIEATV*RMAKG 28
++++VDG +T ++ AG R W+ G++ R+ A + AKG
Sbjct: 685 MEQLVDGQKLTFSEVGAGQR-WRRSQSGSVSRVGAGLDGSAKG 726
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 180 HIQNSPTERPFQQTHNPSERPP 245
H +SPT+ QQ H+P PP
Sbjct: 38 HRSSSPTQTTLQQLHSPDSPPP 59
>03_02_0333 +
7566644-7566995,7567432-7567463,7568301-7568457,
7568568-7568740,7568872-7568973,7569053-7569199,
7569274-7570248
Length = 645
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 313 YQTVENWCRLFQNMNNILPSMVQQRLLVLTTLAHSNLLQHQAN 441
Y+T E +LF +L + Q + +++HS+ + HQAN
Sbjct: 41 YETTEQGEKLFTGPELVLLGLPQATASLARSVSHSSHVNHQAN 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,720,811
Number of Sequences: 37544
Number of extensions: 304055
Number of successful extensions: 1142
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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