Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1801
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   5.7  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   7.5  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   7.5  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   7.5  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 512 VSPDGSLCASGGKDMK 465
           VSP+GSL  S  ++M+
Sbjct: 18  VSPEGSLLPSNSREMR 33


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 313 WLKSSGLKSLTKRKLPRQT 257
           W+K+ G  S T  K  RQT
Sbjct: 171 WMKAHGDSSATGNKRTRQT 189


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 313 WLKSSGLKSLTKRKLPRQT 257
           W+K+ G  S T  K  RQT
Sbjct: 171 WMKAHGDSSATGNKRTRQT 189


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 313 WLKSSGLKSLTKRKLPRQT 257
           W+K+ G  S T  K  RQT
Sbjct: 171 WMKAHGDSSATGNKRTRQT 189


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,595
Number of Sequences: 336
Number of extensions: 4281
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)