Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1799
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92789-5|CAB07217.1|  397|Caenorhabditis elegans Hypothetical pr...    31   0.81 
Z48716-6|CAH04739.1|  238|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z48716-5|CAA88598.2|  264|Caenorhabditis elegans Hypothetical pr...    29   4.3  

>Z92789-5|CAB07217.1|  397|Caenorhabditis elegans Hypothetical
           protein H02I12.3 protein.
          Length = 397

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -1

Query: 272 LELFRVVVAVDSGNHLFQMRSLDFLC*IFLLKYKVNSTT 156
           LE+FR+   + S  HLF +    FL  ++ LKYK+  TT
Sbjct: 123 LEMFRISGMLTSDMHLFALAINQFLGTMYPLKYKIMVTT 161


>Z48716-6|CAH04739.1|  238|Caenorhabditis elegans Hypothetical
           protein F59B10.4b protein.
          Length = 238

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 173 CISIEIFNIKNQEISFEINDFQNPQRRPHEKALDFKLLEEKYFFLP 310
           CIS++ + +   ++  E      PQ +PH   + +K L  KY  LP
Sbjct: 89  CISVDAYQVPATDL--EEAHVSQPQEQPHRSMMVWKDLAAKYPMLP 132


>Z48716-5|CAA88598.2|  264|Caenorhabditis elegans Hypothetical
           protein F59B10.4a protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 173 CISIEIFNIKNQEISFEINDFQNPQRRPHEKALDFKLLEEKYFFLP 310
           CIS++ + +   ++  E      PQ +PH   + +K L  KY  LP
Sbjct: 115 CISVDAYQVPATDL--EEAHVSQPQEQPHRSMMVWKDLAAKYPMLP 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,759,441
Number of Sequences: 27780
Number of extensions: 300442
Number of successful extensions: 470
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)