Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1798
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    33   0.039
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    26   6.0  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   7.9  

>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 33.1 bits (72), Expect = 0.039
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 197 QLAEIQRRKESVNYKCSLYK-CEKCYKGFMTDVTYTNHM 310
           ++  IQ++ E V  K   Y+ CE C K F ++  Y++HM
Sbjct: 51  KILSIQKQNEEVQKKAEFYQNCEVCNKKFYSEGAYSSHM 89


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 613 LQEKTALYPGLLCNYKHYVINFVCAITSI 527
           L+EK   YPG++    HYV+N    I S+
Sbjct: 499 LEEKK--YPGIVWERIHYVLNIYTTINSV 525


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/44 (20%), Positives = 19/44 (43%)
 Frame = +2

Query: 176  MMLSEEEQLAEIQRRKESVNYKCSLYKCEKCYKGFMTDVTYTNH 307
            M+L  EE    ++    ++   C +  C+KC+  +     +  H
Sbjct: 1042 MVLPSEEFEMHLRGHLNNIRLNCEVSNCKKCFSNYEDMFKHLQH 1085


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,603
Number of Sequences: 5004
Number of extensions: 53527
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)