Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1798
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally sym... 40 0.002
AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally sym... 40 0.002
Z73906-7|CAA98119.2| 428|Caenorhabditis elegans Hypothetical pr... 31 0.60
U40959-3|AAA81767.2| 445|Caenorhabditis elegans Hypothetical pr... 31 1.0
AC006614-2|AAF39763.1| 254|Caenorhabditis elegans Drosophila od... 30 1.4
U88167-8|ABE73339.1| 140|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z83240-2|CAB05814.2| 360|Caenorhabditis elegans Hypothetical pr... 28 5.6
AL021483-7|CAA16344.3| 218|Caenorhabditis elegans Hypothetical ... 28 5.6
AL032660-1|CAA21752.1| 711|Caenorhabditis elegans Hypothetical ... 28 7.4
Z77652-9|CAB01116.1| 220|Caenorhabditis elegans Hypothetical pr... 27 9.8
>AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform b protein.
Length = 339
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 224 ESVNYKCSL-YKCEKCYKGFMTDVTYTNHMIRHDPVSTGLNVQHIIPQ 364
E N++ L + CEKCY+ F + +Y HM H VS+ + I+PQ
Sbjct: 260 EHENHREGLEFFCEKCYRPFADEASYNQHMSYHTRVSSLIETGEIVPQ 307
>AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform a protein.
Length = 365
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 224 ESVNYKCSL-YKCEKCYKGFMTDVTYTNHMIRHDPVSTGLNVQHIIPQ 364
E N++ L + CEKCY+ F + +Y HM H VS+ + I+PQ
Sbjct: 286 EHENHREGLEFFCEKCYRPFADEASYNQHMSYHTRVSSLIETGEIVPQ 333
>Z73906-7|CAA98119.2| 428|Caenorhabditis elegans Hypothetical
protein D2030.7 protein.
Length = 428
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 191 EEQLAEIQRRKESVNYKCSLYKCEKCYKGFMTDVTYTNHMIRHDPVSTGLNVQHIIPQ 364
EE +Q R SV + +KC C + F + T H+ H+ G ++ HI+P+
Sbjct: 338 EEYCNHVQDRHCSV----ARFKCSSCERKFWDIRSGTQHLKAHNEDGAGNSISHILPE 391
>U40959-3|AAA81767.2| 445|Caenorhabditis elegans Hypothetical
protein B0310.3 protein.
Length = 445
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 158 EEDIHVMMLSEEEQLAEIQRRKESVNYKCSLYKCEK 265
++D+ VM L +E+ +++ YKC++YK K
Sbjct: 183 QKDVEVMKLETKEKARSGRKKNRKSKYKCNMYKMTK 218
>AC006614-2|AAF39763.1| 254|Caenorhabditis elegans Drosophila
odd-skipped-like protein2 protein.
Length = 254
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 215 RRKESVNYKCSLYKCEKCYKGFMTDVTYTNHMIRHDP 325
R + ++ K +KCE C KGF T H HDP
Sbjct: 168 RDHKYIHQKDRPFKCEICGKGFCQSRTLLVHRATHDP 204
>U88167-8|ABE73339.1| 140|Caenorhabditis elegans Hypothetical
protein D2092.10 protein.
Length = 140
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 212 QRRKESVNYKCSLYKCEKCYKGFMTDVTYTNHMIRHDPV 328
++++E +N K C KC F + Y HM H P+
Sbjct: 18 KKKEELINEKRMFMDCPKCLMIFFDMIMYRMHMAMHIPL 56
>Z83240-2|CAB05814.2| 360|Caenorhabditis elegans Hypothetical
protein T23H4.3 protein.
Length = 360
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +2
Query: 137 YDNVKLFEEDIHVMMLSEEEQLAEI---QRRKESVNYK--CSLYKCEKCYKGFMTDVTYT 301
YD F + + M++++ + ++ + S +YK C++Y C KC +
Sbjct: 224 YDE-NAFAKPGKISMMTKDSKFQKVIGHPKDASSNDYKKVCAIYHCSKCMHQDFQQIVEQ 282
Query: 302 NHMIRHDPVSTGLNVQ 349
H+ ++P+ T VQ
Sbjct: 283 EHIELNNPIITNAPVQ 298
>AL021483-7|CAA16344.3| 218|Caenorhabditis elegans Hypothetical
protein Y38H8A.5 protein.
Length = 218
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 251 YKCEKCYKGFMTDVTYTNHMIRHD 322
+ CE C KGF + Y NH + H+
Sbjct: 136 FVCEICGKGFHQNGNYKNHRLTHE 159
>AL032660-1|CAA21752.1| 711|Caenorhabditis elegans Hypothetical
protein Y70G10A.2 protein.
Length = 711
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 516 ICVSSQI*HCNSTKCIK*NLFINY*MFSEFK 424
+CV Q +CNST+C +F+ Y F+ FK
Sbjct: 33 LCVLPQ--YCNSTECDVEKIFLAYDYFTSFK 61
>Z77652-9|CAB01116.1| 220|Caenorhabditis elegans Hypothetical
protein C06B3.6 protein.
Length = 220
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -3
Query: 464 ETFSLTTKCFQNLKYDLKQMQTEHVILMKDNTIIE 360
E ++K + L+Y++K+++ EH L K+N +E
Sbjct: 152 EFLGYSSKDWPALQYEMKELEEEHEELEKENASLE 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,189,127
Number of Sequences: 27780
Number of extensions: 303391
Number of successful extensions: 754
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -