Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1797
(418 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces... 155 3e-39
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe... 155 3e-39
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb... 155 3e-39
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 50 2e-07
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 27 1.5
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom... 26 2.0
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 2.7
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 3.6
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 25 3.6
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 4.7
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S... 25 4.7
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 4.7
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 6.2
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 6.2
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 6.2
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 24 8.2
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 24 8.2
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 24 8.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 24 8.2
>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 155 bits (376), Expect = 3e-39
Identities = 72/82 (87%), Positives = 79/82 (96%)
Frame = +1
Query: 88 VLRDNIQGITKPAIRRLARTGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 267
+LRDNIQGITKPAIRRLAR GGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81
Query: 268 VTAMDVVYALKRQGRTLYGFGG 333
VT++DVVY+LKRQGRT+YGFGG
Sbjct: 82 VTSLDVVYSLKRQGRTIYGFGG 103
>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 155 bits (376), Expect = 3e-39
Identities = 72/82 (87%), Positives = 79/82 (96%)
Frame = +1
Query: 88 VLRDNIQGITKPAIRRLARTGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 267
+LRDNIQGITKPAIRRLAR GGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81
Query: 268 VTAMDVVYALKRQGRTLYGFGG 333
VT++DVVY+LKRQGRT+YGFGG
Sbjct: 82 VTSLDVVYSLKRQGRTIYGFGG 103
>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 155 bits (376), Expect = 3e-39
Identities = 72/82 (87%), Positives = 79/82 (96%)
Frame = +1
Query: 88 VLRDNIQGITKPAIRRLARTGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 267
+LRDNIQGITKPAIRRLAR GGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81
Query: 268 VTAMDVVYALKRQGRTLYGFGG 333
VT++DVVY+LKRQGRT+YGFGG
Sbjct: 82 VTSLDVVYSLKRQGRTIYGFGG 103
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 49.6 bits (113), Expect = 2e-07
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +1
Query: 127 IRRLARTGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 306
IR+LA + K+I+G + EE ++F + + D + +HA RKT+ DVV +KRQ
Sbjct: 391 IRKLANSYSQKKIAGSVIEELTTASELFFKQIANDLSAFADHAHRKTIDTQDVVLLMKRQ 450
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 147 RWSETYLRSYIRRDPRRSQSVPRKRDPR 230
+++ +R++IR D RS+ +K DPR
Sbjct: 273 KYASQIMRAFIRIDFERSKKTKKKHDPR 300
>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 2.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 129 PSFGSHRWSETYLRSYIRRDPRRSQSVPRK 218
PSFG H W YL + +D + S++ +K
Sbjct: 55 PSFGIHPWFSYYLYDDLDKDLQSSETRKKK 84
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 2.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 175 IYEETRGVLKVFLEN-VIRDAVTYTEHAKRKTVTAMDVVYALKRQG 309
I +ET VL E+ I D+ T T+ KRK V ++Y R+G
Sbjct: 132 ITDETPKVLSEIKEHGTISDSKTLTDLKKRKLVERNKIMYFSLRKG 177
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 188 PAAFSKCSSKT*SATLSHTPNTPRGRPSPL 277
P+AF+K ++ S LS NT RP+ L
Sbjct: 539 PSAFTKAGNEALSVPLSGARNTAASRPTNL 568
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 3.6
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 178 YEETRGVLKVFLENVIRDAVTYTEHAKRKT-VTAMDVVY 291
+ E R LK EN+IR+ Y E A + T T +D +
Sbjct: 46 FAERRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAF 84
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.0 bits (52), Expect = 4.7
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +3
Query: 111 HHETGYPSFGSHRWSETYLRSYIRRDPRRSQSVPRKRDPRRCHIHRTRQEEDRHRYGCCV 290
HHE FG+ ET + I+++ + S+ +P + R R+ C V
Sbjct: 585 HHEFDIADFGNAYKEETIPQFRIKKEAKFSEFIPIVAEKLGYPQECMRFWYVVKRHNCTV 644
Query: 291 RSETP 305
R E+P
Sbjct: 645 RVESP 649
>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 116
Score = 25.0 bits (52), Expect = 4.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 208 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 309
F+ V +A KRKT+T DV+ AL G
Sbjct: 46 FISFVTGEASEQCTQEKRKTITGEDVLLALNTLG 79
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.0 bits (52), Expect = 4.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 323 PYRVRPWRFRAYTTSIAVTVFLLACSVYVTASRITFS 213
P++ P RAY A FL CS+ A I FS
Sbjct: 862 PFKNTPKISRAYLRLTASKYFLKLCSIPFYAEHIDFS 898
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 24.6 bits (51), Expect = 6.2
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 71 LNVTGRCCVITSRASRNRLSVVWLAQVE*NVSPVLYTKRPAAFSKCSSKT*SATLSHTPN 250
LNVT V+ +RA +NR + V V L TK + F S S+ + +
Sbjct: 1198 LNVTNPQFVVNTRAGKNRKTNVSANNVSQGTDSRLVTKPTSTFPSPPSPPSSSVWNKREH 1257
Query: 251 TPR 259
P+
Sbjct: 1258 HPK 1260
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 188 PAAFSKCSSKT*SATLSHTPNTPRGRPSPL 277
P + + S K SA+ +H P+ P+G SP+
Sbjct: 464 PVSAPRLSGK--SASRNHVPSPPKGTKSPM 491
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 24.6 bits (51), Expect = 6.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 218 FSRNTLRTPRVSSYIRPEIRFTPPVRAKRRI 126
F NT+R +SS P+ RF P ++RI
Sbjct: 201 FFTNTVRETPLSSAPEPKRRFAPSKHEQKRI 231
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -2
Query: 267 GLPLGVFGVCDSVADHVFEEHFENAAGLFVYKTGD 163
G+P G C+ +++FE+ + LF +GD
Sbjct: 172 GIPCGTANFCNGSLEYLFEQKNPIPSYLFCILSGD 206
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 24.2 bits (50), Expect = 8.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 156 HSTCASQTTDSRFRDALDVITQHLPVTFSAPLSKTF-ASFTATGHLDELLGL 4
H T S T D+ L V++ LP+T + T+ S ++ G + L GL
Sbjct: 5 HDTIKSLTGDASNSRRLIVVSNRLPITIKRKDNGTYDFSMSSGGLVSALSGL 56
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 341 VSSTIFYFYFLSRGGARYPIRPIVSR 418
V T++Y+Y+L G R P + V+R
Sbjct: 177 VHVTMYYYYYLVAKGIRVPWKKWVTR 202
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 168 RSYIRRDPRRSQSVPRKRDPRRCHIHRTRQEEDRHR 275
R R+D RR + ++RD R R+ +EE R +
Sbjct: 1591 RRRARQDDRRDRDSRQQRDRPRDRTSRSAREEKRRK 1626
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,797
Number of Sequences: 5004
Number of extensions: 32435
Number of successful extensions: 116
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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