Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1796
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    29   0.85 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   3.4  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   3.4  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    26   4.5  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    26   6.0  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    26   6.0  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   7.9  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   7.9  

>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 420 LDVGTYGYDNVTNVCPYTLNVFDLNTD--QIIRKYVLRPEDIVSTTF-IANIALDIGT 584
           L+ G +G D V  VCP+  N+F +  D    I KY+  P+ +  + + IA   L I T
Sbjct: 451 LNSGAFGLDEVFQVCPFKSNIFYVLKDVPWSITKYL--PQALQHSGYLIAEDTLQINT 506


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 111 NVVDWNYPDQFSKQQALRT-GALIPENALPVGIERW-RNKLFV 233
           +++ WN P QF  +Q L     L P   L + +ER  R K+FV
Sbjct: 74  DLIQWNDPSQFDNEQFLNALAVLFPR--LSIEVERHVRLKIFV 114


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = +2

Query: 17  LSK*NGSEVFSFLWASLTSISNDKAPRNILVERGRLELPGPVLEAAGSQDWCSDTRERTA 196
           LSK NG +V     A  TSIS D A  N+ V R R++     L    ++ +  D  E TA
Sbjct: 44  LSKINGVDVSLIYPALETSISKDSADLNLPVPRLRVKGKPQELAQKWAEAFPKDLVEVTA 103


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 444 DNVTNVCPYTLNVFDLNTDQIIRK 515
           +++T VCP       +NT+QI+RK
Sbjct: 110 EHITGVCPILTADMLVNTEQIVRK 133


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 188 RTARWYRKVEEQIVRQRS*VALR-YPSYFELHSTGRSI*TIPEI 316
           R  R Y K  EQ++R    VA R +P  F+L  T R+  T P+I
Sbjct: 513 RLDRVYYK-PEQVIRANEEVAWRSFPPTFDLTITPRATTTTPDI 555


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 172 APVL--RACCFENWSG*FQSTTFHENISWS 89
           APVL  + C + N++G  Q+     N+SWS
Sbjct: 19  APVLSYKKCSYRNFNGLLQARFQSNNLSWS 48


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +3

Query: 450 VTNVCPYTLNVFDLNTDQIIRKYV 521
           +TN+ P+T  ++DL  ++I+R+Y+
Sbjct: 399 LTNLEPHTTFLWDLEENRIVRQYM 422


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 32  GSEVFSFLWASLTSISNDKAPRNIL 106
           G +V SFL  SLT  + D   R IL
Sbjct: 255 GGQVISFLTESLTKYAGDPVARKIL 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,523
Number of Sequences: 5004
Number of extensions: 64480
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)