Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1796
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 33 0.29
01_01_0596 + 4435643-4436664,4437241-4437766 33 0.29
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 31 1.2
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845 29 3.5
09_02_0610 - 11206198-11206588,11206812-11207001,11207116-112071... 28 6.2
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443... 28 6.2
08_01_0671 - 5781393-5782503,5782572-5782675 28 8.2
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 28 8.2
01_05_0615 - 23678493-23678948,23679057-23679441,23680250-236805... 28 8.2
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 333 FEGNELGNCQTGLTTVYRVKADQCDR---LWVLDVGTYGYDNVTNVCPYTLNVFDLNTDQ 503
F EL + Q L V +V+ DQ D+ +W DV YD N+ + L++ D+ ++
Sbjct: 35 FLKTELESIQAALEKVSKVQLDQLDKQIKIWARDVRELSYDIEDNIDTFMLHINDIEPNK 94
>01_01_0596 + 4435643-4436664,4437241-4437766
Length = 515
Score = 32.7 bits (71), Expect = 0.29
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 288 DAPY--EPSPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDR--LWVLDVGTYGYDNVT 455
DAP +P L YP G ++ + RVK D+ +W+LD GT+ ++ V
Sbjct: 205 DAPQVNDPYHNLIHYPHQHGKLNCLVESPAGDLMRVKRQSNDKFVVWILDKGTFSWEKVD 264
Query: 456 NVCPYTLNV 482
N+ + L V
Sbjct: 265 NIGDFALFV 273
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 330 SFEGNELGNCQTGLTTVYRVKADQCD---RLWVLDVGTYGYDNVTNVCPYTLNVFDL 491
+F +EL + Q + + +V DQ D ++W DV YD NV + L V DL
Sbjct: 27 TFLNSELESMQAEVDKISKVPLDQLDSQIKIWARDVRELSYDIEDNVDTFMLCVDDL 83
>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
Length = 958
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 345 ELGNCQTGLTTVYRVKADQCD---RLWVLDVGTYGYDNVTNVCPYTLNV 482
EL + Q L V +V DQ D ++W D+ YD N+ + L V
Sbjct: 48 ELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYDMEDNIDTFMLRV 96
>09_02_0610 -
11206198-11206588,11206812-11207001,11207116-11207184,
11207546-11207672,11207809-11208128,11208196-11208353,
11208503-11208580,11209484-11209555,11209994-11210135,
11212580-11213064,11214362-11214947,11215093-11215177
Length = 900
Score = 28.3 bits (60), Expect = 6.2
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Frame = +3
Query: 201 GIERWRNKLFVSVPRWRSGIPATLNYIPLDAPYEPSPKLTP-----YPSFEGNEL----- 350
GI R +F+ RW PA L + P+ S +L P YPS + +E
Sbjct: 155 GISRMYEVVFMGWARWA---PACLVNVGGGTPFVSSVELRPIDDELYPSVKTSESLSLFK 211
Query: 351 -GNCQTGLTTVYRVKADQCDRLW 416
+ TT+ R AD+ DR+W
Sbjct: 212 RSDMGADTTTLTRYPADEHDRIW 234
>05_06_0043 +
25143513-25143866,25144010-25144191,25144284-25144374,
25144452-25144568,25144922-25144976,25145008-25145093,
25145190-25145300,25145564-25145608,25145695-25145740,
25146078-25146152,25146902-25146971,25147128-25147437,
25147778-25147851,25147996-25148151,25148416-25148539
Length = 631
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 143 LEAAGSQDWCSDTRERTARWYRKVEEQI 226
+E S+ CS+T E+ RWY + +E++
Sbjct: 246 IETIRSEFSCSETCEKLQRWYGETDEEV 273
>08_01_0671 - 5781393-5782503,5782572-5782675
Length = 404
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 307 DGSYGASSGM*FKVAGIPERHLGTLTNNLFLHLSIPT 197
DG + A + + AG+P+ HL L N+ ++PT
Sbjct: 107 DGFHAACVELRGRAAGVPDAHLVCLVGNMVTEEALPT 143
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 114 VVDWNYPDQFSKQQALRTGALIPENALPVGIERWRNK 224
+VD DQ K +R I E+ P G ++WRNK
Sbjct: 146 LVDELLSDQHLKNYRMRKVREIQESRTPGGSQKWRNK 182
>01_05_0615 -
23678493-23678948,23679057-23679441,23680250-23680545,
23680983-23681504
Length = 552
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = -2
Query: 256 PERHLGTLTNNLFLHLSIPTGSAFSGIRAPVLRACCFE---NWSG*FQSTTFHENISW 92
P L L + LFL+L I S + PV ACC E W G S +E W
Sbjct: 166 PVFQLEKLKSILFLYLIIEMSSENVQLMLPVFSACCEELISRWMGSIGSDGSYEVDCW 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,457,916
Number of Sequences: 37544
Number of extensions: 435491
Number of successful extensions: 1227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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