Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1795
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757 35 0.075
02_01_0302 - 2021221-2023305 35 0.075
11_04_0137 + 13909204-13909315,13910002-13910999,13911058-139112... 33 0.23
06_02_0085 + 11555539-11555632,11555767-11555867,11556947-115570... 32 0.53
06_03_0159 - 17358853-17360781 31 0.70
02_01_0305 + 2041370-2043114,2043764-2044121 31 0.70
02_05_0154 - 26330109-26330189,26330274-26330411,26330518-263306... 31 0.92
08_02_1245 - 25557201-25558199 30 1.6
03_04_0101 - 17283293-17284009 30 2.1
11_04_0113 - 13590161-13590678,13590817-13590997 29 2.8
02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087... 29 2.8
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 2.8
02_03_0279 + 17250347-17252098 29 3.7
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 29 3.7
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475... 29 4.9
04_04_0347 + 24564589-24565296 29 4.9
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 29 4.9
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 28 6.5
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 28 8.6
04_03_0904 + 20717005-20718087 28 8.6
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482... 28 8.6
>02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757
Length = 397
Score = 34.7 bits (76), Expect = 0.075
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +1
Query: 217 TIQEAPTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHA--APAAHSATTYHTAPA 390
T AP+Y + PA H+A+ YQA++ P A YHA +P T H P
Sbjct: 164 TSSPAPSY-SRPAPHDAAPYQALYGGPYAAATARTPAAAAYHAQVSPFHLQLDTTHPHPP 222
Query: 391 IHATSAIHQVPAY 429
S H+ AY
Sbjct: 223 PSYYSMDHKEYAY 235
>02_01_0302 - 2021221-2023305
Length = 694
Score = 34.7 bits (76), Expect = 0.075
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 241 HAAPAVHEASSYQAIHSA---PTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSAI 411
H +P SY + S+ P+YH P GH P++ + P++ +A H+ P T
Sbjct: 483 HPSPPGSTTPSYPSPPSSSTTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPPQSTPTHPS 542
Query: 412 HQVP 423
+ P
Sbjct: 543 YPSP 546
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 289 SAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSAIHQVP 423
S P+ H +P G P+Y + P++ + +YH+ P H T + H P
Sbjct: 479 STPS-HPSPPGSTTPSYPSPPSSSTTPSYHSPPQGHTTPS-HPSP 521
>11_04_0137 +
13909204-13909315,13910002-13910999,13911058-13911267,
13911522-13912056,13912154-13912461
Length = 720
Score = 33.1 bits (72), Expect = 0.23
Identities = 29/115 (25%), Positives = 36/115 (31%), Gaps = 2/115 (1%)
Frame = +1
Query: 238 YHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSA--TTYHTAPAIHATSAI 411
Y AA H+ S+Q + AP Y AG PT AP T + P A+ +
Sbjct: 526 YEAAHTSHDRPSFQ-LTPAPEYTRGSAGSGVPTSSTAPPRPQVFQTPPYVQPTQGASGSA 584
Query: 412 HQVPAYXXXXXXXXXXXXXXXTALHAASAGHEDHYVDEYAHPKYGYSYSVEDPHT 576
H P A GH H DEY + P T
Sbjct: 585 H-FPYMPTGDNVLNTPAWGLHITPRAPEQGHTQHTYDEYGSASTHHGMPAYSPRT 638
>06_02_0085 +
11555539-11555632,11555767-11555867,11556947-11557056,
11557152-11557227,11557412-11557555,11558432-11558503,
11558601-11559470
Length = 488
Score = 31.9 bits (69), Expect = 0.53
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Frame = +1
Query: 127 HHETPIHYTALHTXXXXXXXXXXXXXXXIHTIQEAPTYH--AAPAV--HEASSYQAIH-- 288
+H+ P HT Q P++ + P+V H++S Y A
Sbjct: 334 YHQPPYTIEPQHTSQNYYSTETPAAPYNYSNFQSYPSFQDSSVPSVPTHQSSFYPASDGT 393
Query: 289 SAPTYHVAPAGHEAPT-YHAAPAAHSATTYHTAPAI 393
SA +Y + + H APT YH P+A + T T PAI
Sbjct: 394 SAVSYSPSGSNHPAPTQYH--PSADTTTHQVTPPAI 427
>06_03_0159 - 17358853-17360781
Length = 642
Score = 31.5 bits (68), Expect = 0.70
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = -1
Query: 324 VACWSYMVGRGRVDCLVGRSLVDCWGCMVGRSFLDGVDSWSSMDFRG----SLCHGSSMQ 157
++ W M+G G V V S++ C VGR D + W M RG ++ + S ++
Sbjct: 438 LSVWEEMIGAGCVPNAVSYSILINGLCNVGR-LKDAMMVWKHMLDRGCAPDTIAYTSMIK 496
Query: 156 GSVVNGRLVVDGLIMAHDIL 97
G V+G +V GL + +D+L
Sbjct: 497 GLCVSG-MVDGGLRLFYDML 515
>02_01_0305 + 2041370-2043114,2043764-2044121
Length = 700
Score = 31.5 bits (68), Expect = 0.70
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 244 AAPAVHEA---SSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSA 408
AA A H A SS + +A H A A + HAA A SA T TA A ++SA
Sbjct: 14 AAAARHAAAAPSSAATLAAAAARHAAAASSSSAARHAAAAPSSAATLATAAAPSSSSA 71
>02_05_0154 -
26330109-26330189,26330274-26330411,26330518-26330633,
26330782-26330863,26332706-26332770,26333016-26333112,
26334066-26334136,26334242-26334304,26334379-26334431,
26335143-26335192,26336295-26336340,26337014-26337019,
26337381-26337511,26337594-26337680,26338472-26338849
Length = 487
Score = 31.1 bits (67), Expect = 0.92
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +2
Query: 176 HRLPLKSMLLQLSTPSKKLLPTMQPQQSTRLLP 274
HRLP + LL +S+ ++L T P++++RL+P
Sbjct: 27 HRLPPRPQLLAVSSSFRRLSLTASPRRASRLVP 59
>08_02_1245 - 25557201-25558199
Length = 332
Score = 30.3 bits (65), Expect = 1.6
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 68 SYIMARRYRLRISCAMIKPSTTRRPFTTLPCILLPW-HRLPLKSMLLQLSTPSKKLLPTM 244
S+ +A R+R + A P T+ P +P I LP+ H PL + L + PS +LL T
Sbjct: 86 SFAIANRHRHPVVSAGHHPLLTQSPHDLVPFIELPFRHIHPLAAALDAI--PSPRLLGTH 143
Query: 245 QPQQSTRLLPTK 280
P LLP +
Sbjct: 144 MPH---HLLPPR 152
>03_04_0101 - 17283293-17284009
Length = 238
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 526 IRQHNDLHVQLRRREVRWKREQL 458
+R H D Q RRREV W+ +Q+
Sbjct: 177 VRVHRDYQAQSRRREVAWEAKQI 199
>11_04_0113 - 13590161-13590678,13590817-13590997
Length = 232
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 325 EAPTYHAAPAAHSATTYHTAPAIHATSA 408
E+PT A PAA +A H A IH +A
Sbjct: 47 ESPTIRATPAAQAAANQHAACNIHEVTA 74
>02_05_0999 +
33405982-33408279,33408356-33408466,33408551-33408703,
33408870-33409033,33409113-33409210,33409296-33409474,
33409588-33409675,33410285-33410451
Length = 1085
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/88 (23%), Positives = 33/88 (37%)
Frame = +1
Query: 115 DQTIHHETPIHYTALHTXXXXXXXXXXXXXXXIHTIQEAPTYHAAPAVHEASSYQAIHSA 294
+QT H P+ Y H+ H E P H + Y +S+
Sbjct: 371 EQTGGHPPPMFYNESHSHDRAWHAHANQS----HQRYEDPRLHMPGSARAMEPYIVDNSS 426
Query: 295 PTYHVAPAGHEAPTYHAAPAAHSATTYH 378
T ++ + HE+P Y + H + TYH
Sbjct: 427 VT-SLSRSSHESPHYFHGSSEHVSDTYH 453
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 520 DEYAHPKYGYSYSVEDPHTG-DHKSQHETRDGDVVKGEYSLLQPD-GSFRKVTYTAD 684
D+ PK ++E+ T H+S HE R G + SL++PD G+ K+ AD
Sbjct: 2662 DDITSPKASQEDALEEVGTELPHESLHENRHGAKDEQTLSLIEPDTGNAEKLPNEAD 2718
>02_03_0279 + 17250347-17252098
Length = 583
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +1
Query: 238 YHAAPAVH----EASSYQAIHS-APTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAI 393
++ AP++H EA Q +H A + APA EAP+ A AA A P +
Sbjct: 55 FYPAPSMHQNHIEAEEGQLLHVLADPFAAAPAAAEAPSGETAIAAVGAAAEEATPTL 111
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 29.1 bits (62), Expect = 3.7
Identities = 27/72 (37%), Positives = 29/72 (40%)
Frame = +1
Query: 214 HTIQEAPTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAI 393
HT AP PA EA+ A AP APA AP+ A P A PA
Sbjct: 75 HTDPAAPP--PPPAEGEAAPPPA--DAPPPEEAPAAEPAPSEAAPPPPAEADQAAAPPAT 130
Query: 394 HATSAIHQVPAY 429
AT IH V Y
Sbjct: 131 DAT-VIHMVHDY 141
>12_01_0582 -
4752576-4752786,4752955-4753037,4753324-4753530,
4755128-4755207,4756853-4756998,4757088-4757719
Length = 452
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1
Query: 211 IHTIQEAPTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEA 330
I +++ YH A+ + Y IH VAP H A
Sbjct: 33 IRVVEDRRGYHGIRAIEDHRGYPDIHEGLVMRVAPRSHTA 72
>04_04_0347 + 24564589-24565296
Length = 235
Score = 28.7 bits (61), Expect = 4.9
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 247 APAVHEASSYQAIHS-APTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSAIHQVP 423
APA H SS+ H+ AP + P AP APA T H APA +S + P
Sbjct: 111 APA-HAPSSHHDRHAPAPVHSSWPWPAHAPA--PAPAVIHGTNSHLAPAPAPSSHVQYSP 167
Query: 424 A 426
A
Sbjct: 168 A 168
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 28.7 bits (61), Expect = 4.9
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = +3
Query: 69 PTSWPGGIVSEYRAP*SNHP-PRDAHSLHCPAYCSRGTGC--P*NPCCSSYPHHPRSSYL 239
PT+ PGG P P P S P CS T C P P + P P SY
Sbjct: 270 PTT-PGGGGGYTPTPSDTPPSPSSGSSRTTPGGCSTPTPCGTPPAPSSGTSPTTPGGSYY 328
Query: 240 PCSPS 254
P +PS
Sbjct: 329 PPTPS 333
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 126 PPRDAHSLHCPAYCSRGTGCP*NPC---CSSYPHHPRSSYLPCS 248
P ++S H PA S G+ P N SSYPH +++P S
Sbjct: 84 PIHASYSGHAPAGSSSGSYAPYNTQHMPASSYPHGSEDNFIPSS 127
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 268 SSYQAIHSAPTYHVAPAGHEAPTYHAAPAA 357
S +++ S+ V GH APT H+APA+
Sbjct: 282 SKGKSVTSSAVPQVTSIGHGAPTVHSAPAS 311
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +1
Query: 232 PTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAP 387
P+Y P + Y + P+Y P + PTY P + TY AP
Sbjct: 196 PSYKPQPKP-TPTPYTPTPTPPSYKPQPKPNPPPTYKPQPKPNPPPTYKPAP 246
>03_05_0488 -
24847076-24847220,24847823-24847872,24848139-24848278,
24848358-24848493,24848584-24848683,24848837-24848949,
24849034-24849132,24849227-24849311,24849799-24850037,
24850202-24850372,24850544-24850784,24850899-24851172,
24851481-24851660,24852170-24852251,24852336-24852437,
24853315-24853384,24853725-24853824,24853931-24854025,
24854105-24854184,24854361-24854439,24854603-24854663,
24855570-24855984
Length = 1018
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +1
Query: 229 APTYHAAPAVHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSA 408
A T A+ +V + S+ + AP+ PT APAA AT AP A SA
Sbjct: 18 AATAAASASVAAQGGLASETSSSSSASAPSTPGTPTVAPAPAAAGATGPRPAPGYTAVSA 77
Query: 409 I 411
+
Sbjct: 78 V 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.127 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,098,846
Number of Sequences: 37544
Number of extensions: 492539
Number of successful extensions: 1791
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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