Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1794
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.6  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   2.6  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    27   3.4  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   6.0  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = -2

Query: 463 VCLFFVWMLIIYIRVYLNLYRYVYQFLVKVTQ------GILNWGRMTVRDFFPVIYYYYL 302
           VC FF  +L  +I   L+ + +++   +  +Q         +    T+  FF   ++++ 
Sbjct: 24  VCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFYWFFFFFF 83

Query: 301 HIYHCKRLH 275
              HC+R H
Sbjct: 84  FFSHCRRFH 92


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 439 LIIYIRVYLN-LYRYVYQFLVKVTQGILNWGRMTVRDFFPVIYYYYLHIYH-CKRLHSC 269
           L++ + +Y N  Y    +++ KV   + ++ R T+      +Y+YY+  +  C R   C
Sbjct: 131 LLLSMTLYYNEKYEVGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVEC 189


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 478 SCDGQVCLFFVWMLIIYIRVYLNL---YRYVYQFLVKV 374
           +C G      +  L++Y+  YLNL   Y+ +Y FL+++
Sbjct: 28  TCSGLSLKSHLLFLLVYVTRYLNLFWRYKSLYYFLMRI 65


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 463 VCLFFVWMLIIYIRVYLNLYRY 398
           +CL FV  L +  R+Y+N Y Y
Sbjct: 84  LCLTFVAFLYLLDRLYINCYEY 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,123
Number of Sequences: 5004
Number of extensions: 58225
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)