Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1794
         (698 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein.                31   3.0  
D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 prot...    31   3.0  
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    31   3.0  
AK093269-1|BAC04115.1|  201|Homo sapiens protein ( Homo sapiens ...    30   9.1  

>X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein.
          Length = 3259

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +1

Query: 379  LPETDKHTYIS----LNIPLYR*LASKQRTNKPVHHTNTCPMWESNPRPSAQQLGPLSTA 546
            LP TD+    S    L  PL++  A++Q   +PV  +N CP W S+   ++   G  S A
Sbjct: 1248 LPSTDQQESCSSTPGLEEPLFK--ATEQHHTQPVLESNLCPDWPSHSEDASALQGGTSVA 1305


>D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 protein.
          Length = 3225

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +1

Query: 379  LPETDKHTYIS----LNIPLYR*LASKQRTNKPVHHTNTCPMWESNPRPSAQQLGPLSTA 546
            LP TD+    S    L  PL++  A++Q   +PV  +N CP W S+   ++   G  S A
Sbjct: 1214 LPSTDQQESCSSTPGLEEPLFK--ATEQHHTQPVLESNLCPDWPSHSEDASALQGGTSVA 1271


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -2

Query: 463 VCLFFVWMLIIYIRVYLNLYRYVYQFLVKVTQGILNWGRMTVRDFFPVIYYYYLHIY 293
           + +F    + IYI +Y+ +Y YVY +L  +   I  +  + +  +  +  Y YL+IY
Sbjct: 9   IYMFMYIFIFIYIFIYIYIYVYVYIYLY-IYFYIFTYIYLYIFIYIYICLYIYLYIY 64


>AK093269-1|BAC04115.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35950 fis, clone TESTI2012090. ).
          Length = 201

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 442 SKQRTNKPVHHTNTCPMWESNPRPS--AQQLGP 534
           +KQ +  P+HH  TC + E+ P PS  A+ L P
Sbjct: 166 TKQGSRDPLHHCGTCCVSETLPEPSTGARPLAP 198


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,330,677
Number of Sequences: 237096
Number of extensions: 2060572
Number of successful extensions: 2968
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2958
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)