Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1794
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF077546-5|AAC26316.1|  313|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical
           protein F20C5.5 protein.
          Length = 688

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 175 IHSLMFISIRNSRKNV*SVVNRNI*YSNQTINTSEDVCND--KYVNNN 312
           + SLM  +  NS K   + V R I   N TI T ED+  D  K +++N
Sbjct: 373 VESLMLENFNNSLKIALNSVKREISKQNVTIKTDEDMIKDMKKTIDSN 420


>AF077546-5|AAC26316.1|  313|Caenorhabditis elegans Hypothetical
           protein T08E11.3 protein.
          Length = 313

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -2

Query: 214 CENFEWK*TSNYVFPIVFENVFTGGRTSCESARSTYISRWVAHLRCKCL-WAPVTT*YQV 38
           CEN +W   + Y   +V  N    G++  ++++ T+  ++  H   KC+ W  + + Y V
Sbjct: 60  CENRKWSIETEYTLKLVSHN----GKSLKKNSKDTF-EKFTGHGWSKCISWKDLESDYLV 114

Query: 37  DCELV 23
           D  +V
Sbjct: 115 DDSIV 119


>Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical
           protein F21A3.2b protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = -2

Query: 460 CLFFVWMLIIYIRVYLNLYRYVYQFLVKVTQGILNWGRMTVRDFFPVIYYYYLHIYH 290
           C+ F++M++I   + L + R +Y+F  K   G   +  +     F + Y++ L   H
Sbjct: 13  CILFLFMMLIVSIILLFVSRPIYKFKCKYFPGDQEYELLWTTKNFILTYFFTLISTH 69


>Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical
           protein C54E10.1 protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +1

Query: 97  TLRYKCSARTHKRSYHQ*KHFQKQ*EIHSLMFISIRNSRKNV*SVVNRNI*YSNQTINTS 276
           T+  K  AR HKR Y   K+  K     SL+ I    +  ++   +     YSN ++NT+
Sbjct: 628 TMINKTQARRHKRKY---KYRSKGNHSRSLLGIHTSPTSSSMPQAI-----YSNDSLNTT 679

Query: 277 EDVCNDKYVNN 309
           + +  D+ +N+
Sbjct: 680 DGLFGDESLNS 690


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,647,206
Number of Sequences: 27780
Number of extensions: 323834
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)