Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1793
         (720 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3YRH7 Cluster: Putative uncharacterized protein; n=1; ...    36   0.76 
UniRef50_A3J3K7 Cluster: Putative uncharacterized protein; n=1; ...    33   9.4  
UniRef50_Q5CTG1 Cluster: Ubiquitin fusion degradation (UFD1) fam...    33   9.4  
UniRef50_Q55G07 Cluster: Putative uncharacterized protein; n=1; ...    33   9.4  

>UniRef50_Q3YRH7 Cluster: Putative uncharacterized protein; n=1;
           Ehrlichia canis str. Jake|Rep: Putative uncharacterized
           protein - Ehrlichia canis (strain Jake)
          Length = 80

 Score = 36.3 bits (80), Expect = 0.76
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 190 VLRTKNMNNNTDFTVFHTIIHYTRTHRYYLKPILNLLVYFDNYDVLRNASNKY 32
           ++ T ++   TD    HT IHY  TH  ++    N+ +YF+ Y  ++  +N Y
Sbjct: 20  IIITNSLQAYTDILKTHTTIHYAYTHNTHISYNTNISLYFE-YTCIKKLNNLY 71


>UniRef50_A3J3K7 Cluster: Putative uncharacterized protein; n=1;
           Flavobacteria bacterium BAL38|Rep: Putative
           uncharacterized protein - Flavobacteria bacterium BAL38
          Length = 424

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -3

Query: 190 VLRTKNMNNNTDFTVFHTIIHYTRTHRYYLKPILNLLVYFDNYDVLRNASNKYIVFFFSK 11
           +L T NM+      VF+  + +   +  YLK I N + YFD  D   N S +   FF+ K
Sbjct: 243 ILETNNMDLKIKHRVFNEFLIFAVKNPTYLKDIDNAIPYFD-IDREINVSKEVAKFFWKK 301


>UniRef50_Q5CTG1 Cluster: Ubiquitin fusion degradation (UFD1) family
           protein, double Psi beta barrel fold; n=2;
           Cryptosporidium|Rep: Ubiquitin fusion degradation (UFD1)
           family protein, double Psi beta barrel fold -
           Cryptosporidium parvum Iowa II
          Length = 658

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -3

Query: 238 LLKFSRIPIIISVPTPVLRTKNMN-NNTDFTVFHTIIHYTRTHRYYLKPILNLLVYFDNY 62
           +L +S  P  IS+P  VLR  N+N N++DF     II    T++  LK         +N 
Sbjct: 158 VLDYSEEPGYISLPNKVLRCLNINPNDSDFKSNKPIIWIQITYKKLLKGSFASFEILNNQ 217

Query: 61  DVLR 50
           D+ +
Sbjct: 218 DIFK 221


>UniRef50_Q55G07 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 246

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 196 TPVLRTKNMNNNT-DFTVFHTIIHYTRTHRYYLKPILNLLVYFDNYDVLRNASN 38
           +P   TKN NNN  +F   HT   Y    ++ LK  LN+ +  D Y  L + +N
Sbjct: 183 SPSSSTKNNNNNNNEFINCHTFAKYLIEEKFKLKWPLNINMVEDEYPFLSSLTN 236


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,610,407
Number of Sequences: 1657284
Number of extensions: 12676473
Number of successful extensions: 25941
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25917
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)