Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1793
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    25   0.62 
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   4.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   5.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   5.8  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +3

Query: 150 VKSVLLFIFLVLRTGVG--TDIMIGILEN 230
           + +VLLFIF+V+++GV   T   + I+ N
Sbjct: 159 IANVLLFIFIVVKSGVAFQTIEFVSIIRN 187


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 596 IKITNRRNELYSALIQLYSIIRFIL 670
           +K+    N LYS  + L+  + FIL
Sbjct: 241 VKVAKDHNSLYSLHLLLWITVTFIL 265


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 208 ISVPTPVLRTKNMNNNTD 155
           + VP  + +TK+M N+T+
Sbjct: 87  VMVPIVIFKTKDMRNSTN 104


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 208 ISVPTPVLRTKNMNNNTD 155
           + VP  + +TK+M N+T+
Sbjct: 87  VMVPIVIFKTKDMRNSTN 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,982
Number of Sequences: 336
Number of extensions: 3566
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)