Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1793
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.7  
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...    25   8.2  
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...    25   8.2  
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...    25   8.2  

>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = -3

Query: 244 IVLLKFSRIPIIISVPTPVLRTKNMNNNTDFTVF-HTIIHYTRTHRYYLKPILNLLVYFD 68
           I+ +  S     + +  P+  T  +     F+     ++ +T   +Y    +LN L+YF 
Sbjct: 528 IMFIAHSTCSFFVEIAQPITLTIRLIKTKFFSPTPRDLLEWTAPTKYVYSQVLNKLIYFF 587

Query: 67  NYDVLRNASNKYIVFFFS 14
              +     N  ++ F S
Sbjct: 588 TIAICYACINPLVLLFAS 605


>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +2

Query: 230 FKQNDSVEKLFLENIIQRSQLVQTEKVGIKSVLWIPINNS---QTSTVFG 370
           +++  +V KLFLEN+I R  +  TE    K+V  + +  S   Q  T++G
Sbjct: 52  YEETRAVLKLFLENVI-RDAVTYTEHAKRKTVTSLDVVYSLKRQGRTIYG 100


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +2

Query: 230 FKQNDSVEKLFLENIIQRSQLVQTEKVGIKSVLWIPINNS---QTSTVFG 370
           +++  +V KLFLEN+I R  +  TE    K+V  + +  S   Q  T++G
Sbjct: 52  YEETRAVLKLFLENVI-RDAVTYTEHAKRKTVTSLDVVYSLKRQGRTIYG 100


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +2

Query: 230 FKQNDSVEKLFLENIIQRSQLVQTEKVGIKSVLWIPINNS---QTSTVFG 370
           +++  +V KLFLEN+I R  +  TE    K+V  + +  S   Q  T++G
Sbjct: 52  YEETRAVLKLFLENVI-RDAVTYTEHAKRKTVTSLDVVYSLKRQGRTIYG 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,142
Number of Sequences: 5004
Number of extensions: 59793
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)