Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1793
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797     29   2.8  
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743...    28   8.6  
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124...    28   8.6  

>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
          Length = 518

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 323 VLWIPINNSQTSTVFGMD*KSPIN*LTARPSSTLAFLVDCRSLELRC 463
           V W+P+++  TS +F ++ +S    L    SS L F+     LE+ C
Sbjct: 410 VSWVPLSSVVTSEIFPLEVRSAALGLGGAISSALTFMQSQSFLEMLC 456


>10_08_0573 +
           18872720-18872781,18873261-18873610,18873917-18874334,
           18875172-18877180,18877390-18877398,18880291-18880398,
           18880399-18880469,18880769-18881785
          Length = 1347

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 321 PCFGYQLIIVRLPQFSEWIKK 383
           PCF Y  II R  QF EW+ K
Sbjct: 341 PCFAYCSIIPREFQFEEWLIK 361


>03_05_0478 -
           24712157-24712177,24712206-24712260,24712377-24712473,
           24712558-24713302,24713822-24714189,24714279-24714419,
           24715480-24715849
          Length = 598

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 398 LTARPSSTLAFLVDCRSLELRCLGKRVLFCSEQV 499
           LTA+ SS ++FL++CR L +  +G  + F   ++
Sbjct: 336 LTAKISSYVSFLIECRPLSI-SMGNAIRFLKNRI 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,346,327
Number of Sequences: 37544
Number of extensions: 301662
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)