Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1793
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022985-4|AAB69965.1|  362|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF039716-3|AAB96736.1|  515|Caenorhabditis elegans Hypothetical ...    29   4.4  

>AF022985-4|AAB69965.1|  362|Caenorhabditis elegans Hypothetical
           protein T15B7.12 protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -3

Query: 205 SVPTPVLRTKNMNNNTDFTVFHTIIHYTRTHRYYLKPILNLLVYFDNYDVLRNASNKYIV 26
           +VP P   T  + N+T   +  T++   R   YY+   L +  +F N  +++  S+K ++
Sbjct: 11  TVPYPEPGTDEVGNSTIPWLITTVVKAYRPFHYYILTFLVVFAFFANIMIVKVLSHKEMI 70


>AF039716-3|AAB96736.1|  515|Caenorhabditis elegans Hypothetical
           protein W03G9.2 protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 205 SVPTPVLRTKNMNNNTDFTVFHTIIHYTRTHRYYLK 98
           +VPTP+L  +     T+  V   I H  +T R Y+K
Sbjct: 376 NVPTPILEVRFEGAKTEEDVARRIAHIRKTGRAYIK 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,541,739
Number of Sequences: 27780
Number of extensions: 313077
Number of successful extensions: 685
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)