Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1792
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 232 2e-62
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 224 5e-60
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 124 1e-29
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 104 7e-24
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 28 0.72
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 6.7
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 6.7
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 25 6.7
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.9
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 8.9
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 232 bits (568), Expect = 2e-62
Identities = 102/148 (68%), Positives = 121/148 (81%)
Frame = +3
Query: 72 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 251
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 252 HLPRAGFVDLEPTGVDEVRTGTYRQLVHSQQLITG*EDAANNYARGHYTIGKEIDHLVLD 431
++PR+ +VDLEP +D+VRTG YR L H +QLITG EDA+NNYARGHYT+GKE+ V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 432 RIRKLADQCTGLQGFLIFHSFGGGTGSG 515
+IR++AD C+GLQGFL+FHSFGGGTGSG
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSG 148
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 224 bits (548), Expect = 5e-60
Identities = 104/153 (67%), Positives = 123/153 (80%), Gaps = 5/153 (3%)
Frame = +3
Query: 72 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 236
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 237 TGAGKHLPRAGFVDLEPTGVDEVRTGTYRQLVHSQQLITG*EDAANNYARGHYTIGKEID 416
TG GK +PR+ +VDLEP +D+VRTG Y+ L H +Q++TG EDA+NNYARGHYT+GKE+
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 417 HLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSG 515
VL+RIR++AD C+GLQGFL+FHSFGGGTGSG
Sbjct: 120 DSVLERIRRMADNCSGLQGFLVFHSFGGGTGSG 152
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 124 bits (298), Expect = 1e-29
Identities = 62/148 (41%), Positives = 83/148 (56%)
Frame = +3
Query: 72 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 251
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 252 HLPRAGFVDLEPTGVDEVRTGTYRQLVHSQQLITG*EDAANNYARGHYTIGKEIDHLVLD 431
++PRA VDLEP +D V++G + L +I G A N +A+GHYT G E+ VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 432 RIRKLADQCTGLQGFLIFHSFGGGTGSG 515
+R+ A+ C LQGF + HS GGGTGSG
Sbjct: 119 VVRREAEACDALQGFQLTHSLGGGTGSG 146
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 104 bits (250), Expect = 7e-24
Identities = 60/149 (40%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Frame = +3
Query: 75 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 254
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 255 LPRAGFVDLEPTGVDEVRTGTYRQLVHSQQ-LIT-G*EDAANNYARGHYTIGKEIDHLVL 428
+PRA +DLEP V+ + + TY L + + LIT A NN+A G Y+ + I ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 429 DRIRKLADQCTGLQGFLIFHSFGGGTGSG 515
D I + AD L+GF + HS GGTGSG
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSG 148
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 28.3 bits (60), Expect = 0.72
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Frame = +1
Query: 43 FKHRKKLKSKCVSASLYTLAK----PESRS--VMPAGSFTAWSTAFSLMARCPQTRPSGV 204
F + K KS S LYT+ + PES + A + WST + + P+T +
Sbjct: 648 FVNAIKAKSFEFSTFLYTVIEYCVNPESPEHVIFEADAMELWSTFLMYIQKLPETFTLLI 707
Query: 205 ETILLTLSSARPELASTYPVLAS-SILNLLVLMR 303
+L LS A L +++S +L+ VLM+
Sbjct: 708 PHLLYHLSQATSTLPFVLMIVSSYQLLDNTVLMK 741
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 125 ITDLDSGLANVYRDALTHFDLSF 57
+T +D GLA YRD TH + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 6.7
Identities = 22/58 (37%), Positives = 27/58 (46%)
Frame = +1
Query: 103 KPESRSVMPAGSFTAWSTAFSLMARCPQTRPSGVETILLTLSSARPELASTYPVLASS 276
K E RS +P F S++ S R RP T L SS+ LAST P+ SS
Sbjct: 255 KVEKRS-LPPQDFGNASSSTSAKRR----RPDHNHTSTLDASSSNTSLASTGPMTVSS 307
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 6.7
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +1
Query: 121 VMPAGSF-TAWSTAFSLMARCPQTRPSGVET---ILLTLSSARPELASTYPVLASSILNL 288
+ PAG F AWS ++ + T SG+ T ILL L Y A+S+
Sbjct: 459 LFPAGIFWLAWSGYYTYVHWIVPTL-SGLLTGAGILLIFLQCLNYLLDAYLFRAASVFAA 517
Query: 289 LVLMRSALA 315
V+MRSA+A
Sbjct: 518 NVIMRSAVA 526
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 414 DHLVLDRIRKLADQCTGLQGFLIFHSFG 497
+H+ L +IR D TG+Q F+ + G
Sbjct: 642 EHITLAKIRSTKDTFTGVQWFISIVTIG 669
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 268 PARGKCLPAPVSLKKVLKESSPPP 197
P RG +P P S+ S PPP
Sbjct: 41 PVRGLTIPPPPSVDHSAPPSGPPP 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,962
Number of Sequences: 5004
Number of extensions: 51200
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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