Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1791
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    32   0.069
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    30   0.28 
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.0  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    26   6.0  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   7.9  

>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -1

Query: 629 LSIGCDSRSVASFLHDQHRLVLSLFIAVREV--TVADCHRFAYLHQFVNHVPSEDM 468
           ++  CD      +  D+H  V    IA++E+  TV +  R+   HQ ++++P+ D+
Sbjct: 229 VTFSCDISYDPFYYMDKHNKVYGYVIAIKELAKTVPNLFRYTVAHQKISNLPTTDL 284


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 209 GAQTGSVVNTGPNKSSASQPARNSVGCVY 295
           GA++ S+ NT  N SS ++PA   +G VY
Sbjct: 270 GAESDSITNTVSNASSDAEPAHRHLGPVY 298


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 203 AHGAQTGSVVNTGPNKSSASQPARNS 280
           AH +      +TGP+ SSASQP+  S
Sbjct: 343 AHESSRSKKKHTGPSLSSASQPSAAS 368


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 510 LPASICEPRPVRGYDRRPLAGKRPTLLIV 424
           L  + C+P+ + GYD RP + +   LL V
Sbjct: 98  LTPTTCQPKVIIGYDTRPSSPRLAELLKV 126


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 209 GAQTGSVVNTGPNKSS 256
           G+QTGS+VN  P +SS
Sbjct: 58  GSQTGSLVNAPPKRSS 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,383
Number of Sequences: 5004
Number of extensions: 46222
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)