Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1791
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 33 0.29
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 31 0.89
02_04_0591 - 24159654-24160155,24160233-24160316,24160898-241609... 31 0.89
12_01_1114 + 11899808-11900089,11900278-11900451,11901269-11901604 28 6.2
03_05_0402 - 23851755-23851802,23852012-23852022,23853055-23853427 28 6.2
01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199... 28 6.2
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 28 8.3
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 482 GRGSQIDAGKRNDGSQQRSPP*QL*RGRGQADAGREESWRRTW 610
G+G G+RND ++ SP R +A EE+WRR W
Sbjct: 378 GQGQGQSEGRRNDWRRRWSPR----RAAARAQVAAEENWRRAW 416
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 31.1 bits (67), Expect = 0.89
Identities = 20/42 (47%), Positives = 22/42 (52%)
Frame = -3
Query: 576 SACPLPLHSC*GGDRC*LPSFRLPASICEPRPVRGYDRRPLA 451
+A PLPLH GG LP R P S P+P RRPLA
Sbjct: 7 NASPLPLHP--GGSSSLLPRKRPPPSPPPPQPPCPPPRRPLA 46
>02_04_0591 -
24159654-24160155,24160233-24160316,24160898-24160944,
24161035-24161103,24161259-24161310,24161693-24161775,
24162312-24162422,24162808-24163211,24163308-24163380,
24163460-24163510,24163882-24164073,24164176-24164302,
24164753-24164934,24165023-24165226,24165738-24165836
Length = 759
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 507 VSETMAVSNGHLPNSYEEGEDKPMLVVKKAGDGPGITADTQQAASRRACAVLRATPTT 680
V ++ V+NG + E + P +V K G PG+ + ++AA ++ + + TT
Sbjct: 332 VKQSAKVANGASAETSERVDGSPAMVKSKRGRPPGLKSLEKKAAGKKVLGLKKVEETT 389
>12_01_1114 + 11899808-11900089,11900278-11900451,11901269-11901604
Length = 263
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 479 TGRGSQIDAGKRNDGSQQRSPP*QL*RGRGQ-ADAGREESWR 601
TGRG AG+ ND +++R+PP + GR A+ GR R
Sbjct: 216 TGRGCLHCAGEDNDAAEERAPPAE---GRASPAEGGRRRRAR 254
>03_05_0402 - 23851755-23851802,23852012-23852022,23853055-23853427
Length = 143
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 576 MLVVKKAGDGPGITADTQQAASRRACAVLRATPTTHEC*SCP 701
M+V AG PGI D + R + + PT+HE CP
Sbjct: 1 MVVPSSAGPVPGIAPDGAEVIPSRCRTLPQPAPTSHEV--CP 40
>01_06_1473 -
37619415-37619561,37619649-37619723,37619800-37619919,
37620074-37620127,37620204-37620426,37620506-37620585,
37620675-37620764,37620847-37620960,37621192-37621272,
37621383-37621490,37621677-37621722,37621802-37621899,
37621975-37622148,37622456-37622548,37623229-37623285,
37623399-37623438,37623567-37623685,37624179-37624298,
37624723-37624815,37624940-37625251,37625325-37625444,
37625545-37625658,37625731-37625910,37625996-37626110,
37626195-37626358,37626584-37626769,37626888-37626978,
37627089-37627153,37627223-37627297,37627410-37627493,
37627575-37627742,37628160-37629293
Length = 1579
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 560 GRGQADAGREESWRRTWNHSRYSTGS 637
G G AD GREE W HS GS
Sbjct: 83 GLGYADDGREEDWTHRTIHSSSDEGS 108
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -1
Query: 626 SIGCDSRSVASFLHDQHRLVLSLFIAVREVTVADCHRFAYLHQFVN 489
SI D+R A+ D ++++ + CH +A L+Q +N
Sbjct: 310 SIRQDTRFAATLPKDSFNATSQCDTSLKDTSFVQCHEYAELYQIIN 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,152,306
Number of Sequences: 37544
Number of extensions: 346414
Number of successful extensions: 955
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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