Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1791
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-13|CAC70137.1|  830|Caenorhabditis elegans Hypothetical...    29   4.3  
AF125964-9|AAD14749.2|  523|Caenorhabditis elegans Glutamate tra...    29   4.3  
Z50028-5|CAA90338.1|  661|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U23511-5|AAC46794.1|  578|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL032624-4|CAA21522.1|  661|Caenorhabditis elegans Hypothetical ...    27   9.8  
AL032624-1|CAA21521.1|  209|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AL161712-13|CAC70137.1|  830|Caenorhabditis elegans Hypothetical
           protein Y66D12A.17 protein.
          Length = 830

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
 Frame = +3

Query: 405 WHRDKLKLSIMSDAF-LQAVFDHILGRDVV-----HKLMQVSETMAVSNGHLPNS 551
           +HR +L L + +  F LQA  + I+   ++     H+  +V+ETM VSN   PNS
Sbjct: 493 FHRLRLLLDMNNKGFVLQAFANAIMTSGLIQSGMYHQAKRVAETMIVSNCDAPNS 547


>AF125964-9|AAD14749.2|  523|Caenorhabditis elegans Glutamate
           transporter family protein7 protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 405 WHRDKLK--LSIMSDAFLQAVFDHILGRDVVHKLMQVSETMAVSNGHL 542
           W  D+++  L+++ DA+   V  H L  D+ H+   + + + +  G L
Sbjct: 400 WFIDRVRTALNVLGDAYCACVVQHFLQDDLTHEHHHILDELKLEEGDL 447


>Z50028-5|CAA90338.1|  661|Caenorhabditis elegans Hypothetical
           protein F46F6.1a protein.
          Length = 661

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +3

Query: 468 HILGRDVVHKLMQVSETMAVSNGHLPNSYEEGEDKPMLVVKKAGDGPGITADTQQAASRR 647
           H+L     H+  QVS+  +V +   P++ +     P+   + A  GP  T+  Q A +  
Sbjct: 582 HLLHFQQSHQWAQVSQVGSVPSAMNPSAPDWYAPPPLPPRRPASVGPSSTSSGQPATAFA 641

Query: 648 ACAVLRATP 674
             + +R  P
Sbjct: 642 TSSAIRVPP 650


>U23511-5|AAC46794.1|  578|Caenorhabditis elegans Hypothetical
           protein C32D5.6 protein.
          Length = 578

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +3

Query: 411 RDKLKLSIMSDAFLQAVFDHILGRDVVHKLMQVSETMAVSNGHLPNSYEEGEDK 572
           R   ++++ SDA     +DH+   + +  L  ++ET    N  + N +E  E++
Sbjct: 8   RSLSRITVHSDAEYLDAYDHVTYSNSLELLDTIAETQITLNLFMNNKFELAEER 61


>AL032624-4|CAA21522.1|  661|Caenorhabditis elegans Hypothetical
           protein F46F6.1a protein.
          Length = 661

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +3

Query: 468 HILGRDVVHKLMQVSETMAVSNGHLPNSYEEGEDKPMLVVKKAGDGPGITADTQQAASRR 647
           H+L     H+  QVS+  +V +   P++ +     P+   + A  GP  T+  Q A +  
Sbjct: 582 HLLHFQQSHQWAQVSQVGSVPSAMNPSAPDWYAPPPLPPRRPASVGPSSTSSGQPATAFA 641

Query: 648 ACAVLRATP 674
             + +R  P
Sbjct: 642 TSSAIRVPP 650


>AL032624-1|CAA21521.1|  209|Caenorhabditis elegans Hypothetical
           protein F46F6.1b protein.
          Length = 209

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +3

Query: 468 HILGRDVVHKLMQVSETMAVSNGHLPNSYEEGEDKPMLVVKKAGDGPGITADTQQAASRR 647
           H+L     H+  QVS+  +V +   P++ +     P+   + A  GP  T+  Q A +  
Sbjct: 130 HLLHFQQSHQWAQVSQVGSVPSAMNPSAPDWYAPPPLPPRRPASVGPSSTSSGQPATAFA 189

Query: 648 ACAVLRATP 674
             + +R  P
Sbjct: 190 TSSAIRVPP 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,086,160
Number of Sequences: 27780
Number of extensions: 267309
Number of successful extensions: 590
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)