Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1790
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095     31   0.90 
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256...    30   2.1  
03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977...    30   2.1  
01_01_0840 - 6557931-6558377                                           28   6.3  
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671...    28   8.4  

>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
          Length = 597

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
 Frame = -2

Query: 558 WRQPQVQRKLQRERSP*QQQARSTSQLRV*RGRSMRRWLEHREQSM--LRKMVIHERLWT 385
           WRQ  V+++ Q++R+P QQQ     Q    R + +      R  ++   R     ER  +
Sbjct: 322 WRQQMVEQQQQQQRAPMQQQRMPVVQQAAPRKQRVFTVTVSRAYALQHQRGSTPEERRAS 381

Query: 384 SKKILRKQLEK----WSWSQPEMRHKR--TMVQRRTNM---LGQ*HMSMLVQQHKRRQEQ 232
            ++ +R +L+K        + E R++R   ++++R  +     Q  + + +QQ +RRQEQ
Sbjct: 382 VRERVRLELQKVVAFLQRRELEQRYERAAALLRQRAQLEQAALQEQLKLEMQQMRRRQEQ 441

Query: 231 Q 229
           +
Sbjct: 442 R 442


>05_06_0026 -
           25024807-25025300,25025432-25025495,25025567-25025662,
           25025719-25025929,25026616-25026690,25026820-25027037
          Length = 385

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 494 RACCC*GDRSRCSLRCTCGCLQDHQSCSIFC 586
           R C C   +S C L+  C C QD   CS+FC
Sbjct: 182 RGCNC--KKSSC-LKKYCDCYQDGTGCSLFC 209


>03_06_0505 -
           34397054-34397087,34397127-34397474,34397650-34397757,
           34397847-34398161,34399027-34399442,34399531-34400946
          Length = 878

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 69  RGDHQRGLRLQRTEQRSAWC 10
           RGD QR LRL +  QR +WC
Sbjct: 111 RGDWQRSLRLFKYMQRQSWC 130


>01_01_0840 - 6557931-6558377
          Length = 148

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 201 RRQRCGHRERCEL 163
           RR RCGHR RC L
Sbjct: 54  RRPRCGHRRRCHL 66


>04_04_0965 -
           29762388-29762564,29764272-29766361,29766567-29767170,
           29768395-29768637,29768704-29770203
          Length = 1537

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 647 GGSVKSSVRTTMVCGRGVR*HRRYCRTDGLGDNRRCSVSYSG 522
           GG  ++ V    VCG GVR  + +  TDG G++   S + +G
Sbjct: 170 GGGERTLVSDIGVCGGGVRRGKVFGGTDGGGESSLVSATGAG 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,109
Number of Sequences: 37544
Number of extensions: 295544
Number of successful extensions: 891
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)