Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1790
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110485-14|CAB60362.1| 109|Caenorhabditis elegans Hypothetical... 30 1.9
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 29 3.3
AC006644-5|AAF39834.1| 786|Caenorhabditis elegans Hypothetical ... 29 4.3
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z81529-3|CAB04300.1| 224|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z81529-1|CAB04294.1| 224|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z78198-5|CAB01571.1| 437|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical ... 28 7.5
Z49912-7|CAI70412.1| 554|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z49912-6|CAA90137.1| 615|Caenorhabditis elegans Hypothetical pr... 27 9.9
AL132860-29|CAB60505.2| 386|Caenorhabditis elegans Hypothetical... 27 9.9
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 27 9.9
>AL110485-14|CAB60362.1| 109|Caenorhabditis elegans Hypothetical
protein Y46G5A.20 protein.
Length = 109
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -3
Query: 131 DGFSYHSRSRDSVAVSQGSSSEETTSADYAYSAQSNDQLG 12
D F H+ R S + S SSS T+S+ + S++S+DQ+G
Sbjct: 28 DSFPRHAPRRRSSS-SSSSSSSSTSSSSSSNSSESDDQVG 66
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +2
Query: 428 CSRCSSHRRILRPRYTRSCDVLRACCC*GDRSRCSLRCTCGC 553
C RC + R TR C R CCC C C CGC
Sbjct: 97 CRRCCTCCRTCC--CTRCCTCCRPCCC-----GCGCGCGCGC 131
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 473 TRSCDVLRACCC*GDRSRCSLRCTCGC 553
TR C R CCC C C CGC
Sbjct: 92 TRCCTCCRPCCC-----GCGCGCGCGC 113
>AC006644-5|AAF39834.1| 786|Caenorhabditis elegans Hypothetical
protein F55A3.2 protein.
Length = 786
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 278 YWPSIFVRRCTIVRLCRISGCDQDHFSSCFLSIFLLVHNRSWITIFR 418
YW SIF+R C I LC+ + +S F H + IT F+
Sbjct: 589 YWLSIFLRSCGIDWLCKSNNICSAAWSLVFRDSNKTSHQQYAITYFK 635
>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
protein W09G3.6 protein.
Length = 1125
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 276 HMSMLVQQHKRRQEQQWS**RLEQHRRQRCGH 181
+M M+ ++ +R+Q++ W RL QH ++ H
Sbjct: 685 NMGMISEEMRRKQDEMWLDLRLTQHIKKHSSH 716
>Z81529-3|CAB04300.1| 224|Caenorhabditis elegans Hypothetical
protein F35E8.4 protein.
Length = 224
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +2
Query: 281 WPSIFVRRC-TIVRLCRISGCDQDHFSSCF--LSIFLLVHNRSWITIFRNILCSRCSSHR 451
W ++ + C + C GC D + C LSI L V + ++ + C RCS+
Sbjct: 115 WRTVIAQDCPSACGFCNEGGC-VDAITDCGDDLSICLNVKMQDFVNQYCQKTCKRCSAAT 173
Query: 452 RILRPRYTRSCDV 490
+ P T +C V
Sbjct: 174 TV-APPVTNNCTV 185
>Z81529-1|CAB04294.1| 224|Caenorhabditis elegans Hypothetical
protein F35E8.1 protein.
Length = 224
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +2
Query: 281 WPSIFVRRC-TIVRLCRISGCDQDHFSSCF--LSIFLLVHNRSWITIFRNILCSRCSSHR 451
W ++ + C + C GC D + C LSI L V + ++ + C RCS+
Sbjct: 115 WRTVIAQDCPSACGFCNEGGC-VDAITDCGDDLSICLNVKMQDFVNQYCQKTCKRCSAAT 173
Query: 452 RILRPRYTRSCDV 490
+ P T +C V
Sbjct: 174 TV-APPVTNNCTV 185
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 28.3 bits (60), Expect = 5.7
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +2
Query: 323 CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 490
C IS G + + SC LS + R W TIFR+I R + ++L RYT D
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246
Query: 491 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 598
C R++ S TC L++ Q ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 28.3 bits (60), Expect = 5.7
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +2
Query: 323 CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 490
C IS G + + SC LS + R W TIFR+I R + ++L RYT D
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246
Query: 491 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 598
C R++ S TC L++ Q ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 28.3 bits (60), Expect = 5.7
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +2
Query: 323 CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 490
C IS G + + SC LS + R W TIFR+I R + ++L RYT D
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246
Query: 491 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 598
C R++ S TC L++ Q ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 28.3 bits (60), Expect = 5.7
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +2
Query: 323 CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 490
C IS G + + SC LS + R W TIFR+I R + ++L RYT D
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246
Query: 491 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 598
C R++ S TC L++ Q ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282
>Z78198-5|CAB01571.1| 437|Caenorhabditis elegans Hypothetical
protein F55C5.6 protein.
Length = 437
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 590 ILLLYHRPWWFLRRTLRCPRCIYLCRCT-DSD*VLCRPLLW 709
I L Y +PWW L TLR I + + T + D ++ P W
Sbjct: 267 IFLEYEKPWWPLGTTLRISGKIEVNQTTLEDDFMVFEPSSW 307
>AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical
protein T21D12.11 protein.
Length = 709
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 213 LEQHRRQRCGHRERCELSKKRP 148
+E HRR+RC ++RC + + P
Sbjct: 320 VECHRRRRCSRKQRCHTTTQPP 341
>Z49912-7|CAI70412.1| 554|Caenorhabditis elegans Hypothetical
protein T24F1.3b protein.
Length = 554
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +2
Query: 614 WWFLRRTLRCPRCIYLC--RCTDSD*VLCR 697
W L+ L+C C Y C RC D + CR
Sbjct: 125 WGILKEALKCEHCNYTCHARCRDLVTLDCR 154
>Z49912-6|CAA90137.1| 615|Caenorhabditis elegans Hypothetical
protein T24F1.3a protein.
Length = 615
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +2
Query: 614 WWFLRRTLRCPRCIYLC--RCTDSD*VLCR 697
W L+ L+C C Y C RC D + CR
Sbjct: 186 WGILKEALKCEHCNYTCHARCRDLVTLDCR 215
>AL132860-29|CAB60505.2| 386|Caenorhabditis elegans Hypothetical
protein Y56A3A.28 protein.
Length = 386
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 395 RSWITIFRNILCSRCSSHRRILRPRYTRSCDVL 493
RSW +I R+ LC C + R R Y + D L
Sbjct: 10 RSWTSISRHFLCLECRKYFRNKREFYWHTEDCL 42
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 495 RSTSQLRV*RGRS-MRRWLEHREQSMLRKMVIHERLWTSKKILR 367
R+ LR R R + WLE E+ +R +VIHE +++IL+
Sbjct: 459 RTEKLLRSQRRRDWVGSWLEGLEREKIRFVVIHESYTQARRILK 502
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,674,585
Number of Sequences: 27780
Number of extensions: 229978
Number of successful extensions: 894
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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