Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1788
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0466 + 3702771-3703016,3703133-3703196,3703757-3704055,370... 141 5e-34
03_02_0658 + 10228794-10228943,10229042-10229105,10229510-102298... 111 4e-25
10_08_0983 + 22036489-22036505,22036814-22036928,22037040-220371... 30 1.5
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 30 1.5
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 30 1.9
07_03_0764 + 21335410-21335690,21335840-21336698 29 2.6
06_02_0096 - 11683368-11684581,11684705-11684773,11685356-116854... 29 2.6
01_05_0446 - 22334291-22334751,22335304-22336191,22336290-223365... 29 2.6
12_02_0885 + 23994354-23994584,23994987-23995342,23995549-239956... 29 4.5
03_03_0032 + 13927959-13930040,13930322-13930798 29 4.5
01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206 28 5.9
>05_01_0466 +
3702771-3703016,3703133-3703196,3703757-3704055,
3704666-3704881,3705216-3705422,3705697-3705789,
3706098-3706196,3706300-3706329,3706885-3706938,
3707533-3707586,3707658-3707735,3707927-3708018,
3708093-3708150,3708248-3708322,3708930-3708977,
3709131-3709228,3709446-3709521,3709659-3709721,
3709810-3709901,3710207-3710275,3710410-3710473,
3710545-3710610,3710700-3710777
Length = 772
Score = 141 bits (341), Expect = 5e-34
Identities = 68/151 (45%), Positives = 98/151 (64%)
Frame = +2
Query: 185 IAMVGLPARGKTYISKKLSRYLNWIGINTRVFNLGEYRRHATSAYTSHEFFRADNKEAMA 364
I +VGLPARGKT+ + KL+RYL W+G TR FN+G+YRR A S +FFR DN E +
Sbjct: 373 IVLVGLPARGKTFTAAKLTRYLRWLGHETRHFNVGKYRRLKHGANQSADFFRDDNPEGIE 432
Query: 365 IRQKCALDALQDVCEWLTKGGEVAVFDATNSTLDRRRMIRDLVVHKMGFKLFFVESICDD 544
R + A A++D+ +W+ GG+V +FDATNST RR M+ + + K+ F+E+IC+D
Sbjct: 433 ARNEVAALAMEDMIDWMHGGGQVGIFDATNSTRKRRYMLMKMA--EGNCKIIFLETICND 490
Query: 545 PRIIEQNIMEVKVSSPDYTNIQNTDNVLNDF 637
P IIE+N+ SPDY + + + + DF
Sbjct: 491 PNIIERNVRLKIQQSPDYADQPDYETGVRDF 521
>03_02_0658 +
10228794-10228943,10229042-10229105,10229510-10229805,
10230689-10230904,10231409-10231549,10232407-10232499,
10234010-10234108,10234198-10234227,10234274-10234360,
10234636-10234689,10234758-10234835,10235128-10235202,
10236265-10236356,10236433-10236490,10236590-10236664,
10236966-10237013,10239003-10239065,10239167-10239258,
10239693-10239761,10239867-10239930,10240007-10240072,
10240170-10240271
Length = 703
Score = 111 bits (268), Expect = 4e-25
Identities = 70/186 (37%), Positives = 106/186 (56%), Gaps = 35/186 (18%)
Frame = +2
Query: 185 IAMVGLPARGKTYISKKLSRYLNWIGINTRVFNLGEYRR-----HATSAYTSH------E 331
I +VGLPARGKT+ + KL+RYL W+G T+ FN+G+YRR + TS S+ +
Sbjct: 318 IVLVGLPARGKTFTAAKLTRYLRWLGHETKHFNVGKYRRLKHGINQTSLSASNSVEQTAD 377
Query: 332 FFRADNKEAMAIRQKCALDALQDVCEWLTKGGEVAVFDATNSTLDRRRMI---------- 481
FFR DNKE + R + A A++D+ W+ +GG+V +FDATNST +RR M+
Sbjct: 378 FFRGDNKEGVEARNEVAALAMEDMLSWMQEGGQVGIFDATNSTRNRRNMLMKMAEGKCKS 437
Query: 482 -RDLVVHKMGFK------------LFFVESICDDPRIIEQNIMEVKVS-SPDYTNIQNTD 619
+ ++V M + F+E+IC+D ++E+N M +KV SPDY + +
Sbjct: 438 PKLIIVPIMNINRKRRTYKAYSCTIIFLETICNDQNVLERN-MRLKVQRSPDYAEQTDFE 496
Query: 620 NVLNDF 637
+ DF
Sbjct: 497 AGVRDF 502
>10_08_0983 +
22036489-22036505,22036814-22036928,22037040-22037194,
22037416-22037677,22037826-22038014
Length = 245
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Frame = +2
Query: 344 DNKEAM----AIRQKCALDALQDVCEWLTKGGEVAVFDATNSTLDRRRMIRDLVVHKMGF 511
D+KEA+ A Q A++ L D+C W+ K ++ TN+ ++ L+ F
Sbjct: 88 DDKEALYRRLAPEQLVAVEGLHDLCRWI-KDHKLKRAAVTNAPRSNAELMLSLLGLTEFF 146
Query: 512 KLFFVESICDDPRIIEQ---NIMEVKVSSPDYTNI 607
+ + S CD + +E+ +SPD+T I
Sbjct: 147 PVLVIGSECDRAKPFPDPYLKALELIGASPDHTFI 181
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 140 PIRGERSNYVNIPHVIAMVGLPARGKTYISKKL 238
P+RG R +++ VI + GLP GK+Y++K L
Sbjct: 295 PLRGSRPDHI----VIILRGLPGSGKSYLAKAL 323
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 29.9 bits (64), Expect = 1.9
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 1/157 (0%)
Frame = +2
Query: 23 INNNSDSKKHELNQCTSAMSPETQRLLPPTSETIMTKPFPIRGERSNYVNIPHVIAMVGL 202
+ N+ S+ L + S S + LL T + + PF + E + P ++G
Sbjct: 963 MENSKVSESFLLMKFYSLSSGVAKHLLTATDGSEIDIPFELTDEEQAIIRFPLTSFILGR 1022
Query: 203 PARGK-TYISKKLSRYLNWIGINTRVFNLGEYRRHATSAYTSHEFFRADNKEAMAIRQKC 379
GK T ++ KL + I +R NL E R++T+ E + + + K
Sbjct: 1023 SGTGKTTVLTMKLIQIWQQSLIASRGLNLDE--RNSTAQKDLSEVETFVKQVFITVSPKL 1080
Query: 380 ALDALQDVCEWLTKGGEVAVFDATNSTLDRRRMIRDL 490
+C+ LT+ G V D S L M+ DL
Sbjct: 1081 CSAIRNQICK-LTRYGSGDVSDQA-SILQMPDMVDDL 1115
>07_03_0764 + 21335410-21335690,21335840-21336698
Length = 379
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = +2
Query: 293 YRRHATSAYTSHEFFRADNKEAMAIRQKCALDALQDVCEWLTKGGEVAVFDATNSTLDRR 472
+ +H +T HE F KE +A+ +KC + E + G+V + ++S+L R
Sbjct: 126 FEKHGREVFT-HEIFDTFQKEVVAVMEKC-------IVENIEIEGDVKITTVSDSSLRER 177
Query: 473 RMIRDLVVHKMGFKLFFVESI 535
+++ + + ES+
Sbjct: 178 KVLYNTSTKDISCTCMLFESL 198
>06_02_0096 -
11683368-11684581,11684705-11684773,11685356-11685412,
11685553-11685609,11685758-11685817,11686770-11686893
Length = 526
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -1
Query: 408 SHTSCNASKAHFCLIAMASLLSALKNSWLVYADVACLLYSPRLNTLVLIP 259
SH SCN S AH AM + S +VY VA Y P T V+ P
Sbjct: 130 SHLSCNFSSAHMDTCAMDGDIRIHGRSGVVYV-VASSDYRPENATAVIRP 178
>01_05_0446 -
22334291-22334751,22335304-22336191,22336290-22336550,
22337129-22337588
Length = 689
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 531 DSTKKSLKPILWTTRSLIIRRRSK-VEFVASKTATSPPLVSHSHTSCN 391
D + + + + W+TR IIR +K +E++ S A PPLV H + S +
Sbjct: 513 DVARSNGRVLEWSTRISIIRGIAKGIEYLHSTRANKPPLV-HQNISAD 559
>12_02_0885 +
23994354-23994584,23994987-23995342,23995549-23995663,
23995918-23995962,23996151-23996333,23996802-23996978,
23997345-23997476,23997587-23997766,23999116-23999247,
24000212-24000280,24000377-24000490,24000579-24000806,
24001343-24001486
Length = 701
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +2
Query: 77 MSPETQRLLPPTSETIMTKPFPIRGERSNYVNIPHVIAMVGLPARGKTYISK 232
+ P+ + + PP + + K P + ER N + + +++ + P KTY+ +
Sbjct: 284 LKPKEKPVGPPLNLVVPLKQPPAQPERMNVIKVSNIMGIDPKPFDPKTYVEE 335
>03_03_0032 + 13927959-13930040,13930322-13930798
Length = 852
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 200 LPARGKTYISKKLSRYLNWIGI 265
LP G ++SKK+ R LNW+ +
Sbjct: 225 LPYTGWVFVSKKIGRLLNWLQV 246
>01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206
Length = 584
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -1
Query: 426 PPLVSHSHTSCNASKAHFCLIAMASLLSALKNSWLVYADVACLLYSPRLNTLVLIP 259
PP VS H A L+ + + S K ++YAD LLY N L IP
Sbjct: 76 PPQVSSLHMLL-PPPASLDLLGIGEISSTHKGIVVIYADKCYLLYDASNNHLTAIP 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,623,922
Number of Sequences: 37544
Number of extensions: 386926
Number of successful extensions: 1080
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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