Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1788
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical...   177   8e-45
AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical...   177   8e-45
U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical pr...   168   3e-42
AL022288-9|CAK55188.1|  452|Caenorhabditis elegans Hypothetical ...    39   0.004
AL022288-8|CAA18367.2|  402|Caenorhabditis elegans Hypothetical ...    38   0.006
AL031629-1|CAA20974.1|  287|Caenorhabditis elegans Hypothetical ...    32   0.43 
Z70686-6|CAA94612.1|  352|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z66500-4|CAA91305.2|  630|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AY008130-1|AAG32083.1|  352|Caenorhabditis elegans heterotrimeri...    29   3.0  
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z48334-5|CAA88312.1|  424|Caenorhabditis elegans Hypothetical pr...    28   6.9  
L14745-9|AAK71355.2|  380|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6a protein.
          Length = 450

 Score =  177 bits (430), Expect = 8e-45
 Identities = 88/177 (49%), Positives = 118/177 (66%), Gaps = 6/177 (3%)
 Frame = +2

Query: 125 MTKPFPIRGERSNYVNIPHVIAMVGLPARGKTYISKKLSRYLNWIGINTRVFNLGEYRRH 304
           MT   P     +  V +P+VIA+VGLPARGKTYIS KL RYLNWIGI T+ FN+GEYRR 
Sbjct: 12  MTYFVPKSDNSNEQVRVPNVIALVGLPARGKTYISHKLCRYLNWIGIKTKAFNVGEYRRR 71

Query: 305 ATSAYT--SHEFFRADNKEAMAIRQKCALDALQDVCEWL-TKGGEVAVFDATNSTLDRRR 475
           A +      +EFF  +N     IR +CA  A++D+  +L  K GEVA+ DATN+T DRR+
Sbjct: 72  ACNLEEEGENEFFSPNNARGQKIRDECAKLAIEDMGRYLDNKEGEVAILDATNTTRDRRK 131

Query: 476 MIRDL---VVHKMGFKLFFVESICDDPRIIEQNIMEVKVSSPDYTNIQNTDNVLNDF 637
           ++ +    ++H+  F++FFVES+CDDP II  NI EVK++SPDY  I + +    DF
Sbjct: 132 LLMEFCRNMMHEPPFRVFFVESVCDDPDIINSNITEVKINSPDYKGIMSQEEAKEDF 188


>AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6b protein.
          Length = 435

 Score =  177 bits (430), Expect = 8e-45
 Identities = 88/177 (49%), Positives = 118/177 (66%), Gaps = 6/177 (3%)
 Frame = +2

Query: 125 MTKPFPIRGERSNYVNIPHVIAMVGLPARGKTYISKKLSRYLNWIGINTRVFNLGEYRRH 304
           MT   P     +  V +P+VIA+VGLPARGKTYIS KL RYLNWIGI T+ FN+GEYRR 
Sbjct: 18  MTYFVPKSDNSNEQVRVPNVIALVGLPARGKTYISHKLCRYLNWIGIKTKAFNVGEYRRR 77

Query: 305 ATSAYT--SHEFFRADNKEAMAIRQKCALDALQDVCEWL-TKGGEVAVFDATNSTLDRRR 475
           A +      +EFF  +N     IR +CA  A++D+  +L  K GEVA+ DATN+T DRR+
Sbjct: 78  ACNLEEEGENEFFSPNNARGQKIRDECAKLAIEDMGRYLDNKEGEVAILDATNTTRDRRK 137

Query: 476 MIRDL---VVHKMGFKLFFVESICDDPRIIEQNIMEVKVSSPDYTNIQNTDNVLNDF 637
           ++ +    ++H+  F++FFVES+CDDP II  NI EVK++SPDY  I + +    DF
Sbjct: 138 LLMEFCRNMMHEPPFRVFFVESVCDDPDIINSNITEVKINSPDYKGIMSQEEAKEDF 194


>U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical
           protein K02B2.1 protein.
          Length = 457

 Score =  168 bits (409), Expect = 3e-42
 Identities = 84/166 (50%), Positives = 112/166 (67%), Gaps = 6/166 (3%)
 Frame = +2

Query: 158 SNYVNIPHVIAMVGLPARGKTYISKKLSRYLNWIGINTRVFNLGEYRR-HATSAYTSH-- 328
           S+ V +P+VI MVGLPARGKTYISKKL RYL W G  T+VFN+GEYRR  A +A   H  
Sbjct: 23  SDQVRVPNVIVMVGLPARGKTYISKKLCRYLKWTGFTTKVFNVGEYRRSDANAADAIHGA 82

Query: 329 --EFFRADNKEAMAIRQKCALDALQDVCEWLTKG-GEVAVFDATNSTLDRRRMIRDLVVH 499
              FF  +N +A+ +R + A  A++D+ ++L  G G VA+FDATN+T DRRR+I D    
Sbjct: 83  NASFFSPNNADALKVRAESARRAMEDMADYLNSGTGGVAIFDATNTTKDRRRIIIDF-CK 141

Query: 500 KMGFKLFFVESICDDPRIIEQNIMEVKVSSPDYTNIQNTDNVLNDF 637
           K   + FF+ES+CDDP II+ N+ +VKV+SPDY  +   +    DF
Sbjct: 142 KQRLRCFFIESVCDDPAIIDCNVTDVKVNSPDYKGLMTAEQAKEDF 187


>AL022288-9|CAK55188.1|  452|Caenorhabditis elegans Hypothetical
           protein ZK1025.4b protein.
          Length = 452

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = -3

Query: 613 VLNVCVVRTAHFYFHN---VLFNNPRVITYRFNKEKLEAHLVDYKVSYHPPSVQSRICSI 443
           ++++C   +   + HN    LF+N  V+ +RFN ++++A++V+    + P S +  I ++
Sbjct: 328 LIDICETHSPGKFLHNSTTTLFSNGTVLHFRFNIKEIKANVVEKPYRFFPNSTEGHIWNM 387

Query: 442 EDGDFSAFG 416
            D     FG
Sbjct: 388 HDTMHKIFG 396


>AL022288-8|CAA18367.2|  402|Caenorhabditis elegans Hypothetical
           protein ZK1025.4a protein.
          Length = 402

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 18/75 (24%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = -3

Query: 613 VLNVCVVRTAHFYFHN---VLFNNPRVITYRFNKEKLEAHLVDYKVSYHPPSVQSRICSI 443
           ++++C   +   + HN    LF+N  V+ +RFN ++++A++V+    + P S +  I ++
Sbjct: 328 LIDICETHSPGKFLHNSTTTLFSNGTVLHFRFNIKEIKANVVEKPYRFFPNSTEGHIWNM 387

Query: 442 EDGDFSAFGQPFTHI 398
            D   + +   F H+
Sbjct: 388 HDTVRTVWNFLFFHV 402


>AL031629-1|CAA20974.1|  287|Caenorhabditis elegans Hypothetical
           protein Y106G6D.1 protein.
          Length = 287

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 2   SLRLRGGINNNSDSKKHELNQCTSAMSPETQRLLPPTSETI 124
           SLR   G+ +N D++K  L +  + M  E++ LL P  ETI
Sbjct: 45  SLRKTMGVQSNDDAEKLSLIKKINEMEKESENLLTPGDETI 85


>Z70686-6|CAA94612.1|  352|Caenorhabditis elegans Hypothetical
           protein R10H10.5 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 193 HC-DNMRYVDIIRSFSSDRERFRHNSLTSRRQESLSL 86
           HC DN+  +  I S S   +  R ++ T+R QESL L
Sbjct: 212 HCFDNVNAIIFISSLSEYDQTLREDNCTNRMQESLKL 248


>Z66500-4|CAA91305.2|  630|Caenorhabditis elegans Hypothetical
           protein T05C12.4 protein.
          Length = 630

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 411 HSHTSCNASKAHFCLIAMASLLSALKNSWLVYADVACLLYS 289
           HS       +  FC +A+A L   L   +LV A   C +YS
Sbjct: 424 HSRLLVFICRLAFCFVALALLFVILPTFFLVVAGTGCYIYS 464


>AY008130-1|AAG32083.1|  352|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 193 HC-DNMRYVDIIRSFSSDRERFRHNSLTSRRQESLSL 86
           HC DN+  +  I S S   +  R ++ T+R QESL L
Sbjct: 212 HCFDNVNAIIFISSLSEYDQTLREDNCTNRMQESLKL 248


>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
           protein C06A5.1 protein.
          Length = 1932

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 297 LYSPRLNTLVLIPIQ--FR*RDSFLEMYVFPRAGRPTI 190
           L+ P++ T  LI I   F+  DS+L+M +FPR   P +
Sbjct: 658 LFHPKITTNPLIRITEPFKLIDSYLKMTIFPRKEAPRL 695


>Z48334-5|CAA88312.1|  424|Caenorhabditis elegans Hypothetical
           protein F10B5.5 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/81 (25%), Positives = 38/81 (46%)
 Frame = +2

Query: 167 VNIPHVIAMVGLPARGKTYISKKLSRYLNWIGINTRVFNLGEYRRHATSAYTSHEFFRAD 346
           +N+  +I + G P  GKT + K L+++L+ I +N +      Y +       SH  F   
Sbjct: 169 INVNRLILLTGPPGTGKTSLCKGLAQHLS-IRMNDK------YSKSVMLEINSHSLFSKW 221

Query: 347 NKEAMAIRQKCALDALQDVCE 409
             E+  + QK   D + ++ E
Sbjct: 222 FSESGKLVQK-MFDQIDELAE 241


>L14745-9|AAK71355.2|  380|Caenorhabditis elegans Hypothetical
           protein C02F5.12 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 26/142 (18%), Positives = 59/142 (41%)
 Frame = +2

Query: 80  SPETQRLLPPTSETIMTKPFPIRGERSNYVNIPHVIAMVGLPARGKTYISKKLSRYLNWI 259
           SP+    +   S+ ++ KPF        +    +++  +GL  R     S  +SR     
Sbjct: 67  SPKCLESISAQSQNVLKKPFKSISAELGFAQPLNLVDTLGLKPRD----SDAMSRGKRPA 122

Query: 260 GINTRVFNLGEYRRHATSAYTSHEFFRADNKEAMAIRQKCALDALQDVCEWLTKGGEVAV 439
            +   +F+  +   +     TS +   +D   A+ + +K  LD  +++ +  +     ++
Sbjct: 123 SVLKGLFDDWDPTANLDIPGTSSD-IPSDPSSALKVPKKEVLDESEEILDQTSGSSSFSL 181

Query: 440 FDATNSTLDRRRMIRDLVVHKM 505
            D+  +    R +I DL+  +M
Sbjct: 182 NDSEQANEQERNIIEDLLRQQM 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,592,344
Number of Sequences: 27780
Number of extensions: 330776
Number of successful extensions: 1069
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)