Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1788
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.12 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.12 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.0  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.1  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -1

Query: 507 PILWTTRSLIIRRRSKVEFVASKTATSPPLVSHSHTSCNASKAHFCLIAMASLLSALKNS 328
           P+      L +   + +E V S    SPP  SHS       K+  C+  +A     L++S
Sbjct: 445 PLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSHSRCPPEIHKSCICVRFIAEHTKMLEDS 504

Query: 327 WLVYAD 310
             V  D
Sbjct: 505 TKVKED 510


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -1

Query: 507 PILWTTRSLIIRRRSKVEFVASKTATSPPLVSHSHTSCNASKAHFCLIAMASLLSALKNS 328
           P+      L +   + +E V S    SPP  SHS       K+  C+  +A     L++S
Sbjct: 445 PLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSHSRCPPEIHKSCICVRFIAEHTKMLEDS 504

Query: 327 WLVYAD 310
             V  D
Sbjct: 505 TKVKED 510


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 423 AEKSPSSMLQILLWTDGG 476
           A+++PS  L ++ W  GG
Sbjct: 114 ADRTPSQSLPVIFWIHGG 131


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 423 AEKSPSSMLQILLWTDGG 476
           A+++PS  L ++ W  GG
Sbjct: 114 ADRTPSQSLPVIFWIHGG 131


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 215 KTYISKKLSRYLNWIGINTRVFN 283
           KT IS +  + L W+G +   FN
Sbjct: 299 KTCISGRAFQVLTWLGYSNSAFN 321


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -3

Query: 571 HNVLFNNPRVITYRFNK 521
           H+   +NP+++TY+++K
Sbjct: 308 HDTQRDNPQILTYKYSK 324


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -1

Query: 510 KPILWTTRSLIIRRRSKVEFVASKTATSPPLVSH 409
           +P  W+ R    R+++         AT P L S+
Sbjct: 329 RPAFWSLRKAFARKKTDYSSFGKILATEPTLFSN 362


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 131 KPFPIRGERSNYVNIPHVIAMVG 199
           K   + G + + +NI  VIA VG
Sbjct: 228 KAMVVSGSKGSNINISQVIACVG 250


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 520 EKLEAHLVDYK 488
           +KLE HL++YK
Sbjct: 430 QKLEKHLIEYK 440


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 655 CSI-RSMKII*NIIRVLNVCVVRTAHFYFHNVLFNNPRVITYR 530
           C + RS+ ++ +   +LN+CV+    ++     F  P  ++ R
Sbjct: 119 CDVWRSLDVLFSTASILNLCVISLDRYWAITDPFTYPSKMSRR 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,203
Number of Sequences: 438
Number of extensions: 4021
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)