Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1787
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    25   0.90 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.4  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 296 CRLLSVGRGLYHN 258
           CR    GRG+YHN
Sbjct: 200 CRFWPTGRGIYHN 212


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 274 RPTDNNLHTKIYGHGQLL 327
           +PTDN L  K++G  + L
Sbjct: 49  QPTDNKLAMKLFGSKKAL 66


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 274 RPTDNNLHTKIYGHGQLL 327
           +PTDN L  K++G  + L
Sbjct: 49  QPTDNKLAMKLFGSKKAL 66


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 274 RPTDNNLHTKIYGHGQLL 327
           +PTDN L  K++G  + L
Sbjct: 49  QPTDNKLAMKLFGSKKAL 66


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 691 GPPSRLFCGVNAFSRPIIFLWL 626
           G  +R  CGV A   P+   WL
Sbjct: 625 GMRTRTVCGVAAGDPPLTISWL 646


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 13/57 (22%), Positives = 21/57 (36%)
 Frame = +1

Query: 364 PRGSRLRHVGPAAPPTLLYR*GRRHTLHHPQALPEPQTHRLRRPGYCMCRIRHGDAT 534
           PRG  L       P T+     R     + +  P+P     ++P      + + DAT
Sbjct: 151 PRGGSLPTPVTPTPTTVQQLLRRAQIRRNERRTPDPHDETAKKPRVLSPPLNNNDAT 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,383
Number of Sequences: 438
Number of extensions: 5462
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)