Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1785
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 38 0.001
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 33 0.030
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 30 0.37
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 29 0.85
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 29 0.85
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 29 0.85
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 28 1.1
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 28 1.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.6
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.6
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 27 2.6
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 3.4
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 3.4
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 26 4.5
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 26 4.5
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 26 6.0
SPAC664.08c |||traub transciption factor family protein |Schizos... 26 6.0
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 26 6.0
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 26 6.0
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 7.9
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 25 7.9
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 37.9 bits (84), Expect = 0.001
Identities = 26/103 (25%), Positives = 42/103 (40%)
Frame = +2
Query: 257 GPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFN 436
G + + + N+ N +YN N GN N +Q + ++ G N+ +
Sbjct: 551 GMASSFLGSSGNNNNNNNSNSGNYNNNNSGNNN-----QQHQQSSSSLQGLASSFLNSSS 605
Query: 437 GDKSPGNMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNCYGNEQ 565
G+ + N N ++G QNYN N NN + GN Q
Sbjct: 606 GNSNKQNYNNNNNQNYGNNNNQNYNNN------NNSSQGGNSQ 642
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/63 (23%), Positives = 25/63 (39%)
Frame = +2
Query: 329 NTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNY 508
++ N+ N ++ N NN + K ++ +G S GN N+ NY
Sbjct: 515 SSSNNSNSSNNNSNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSNSGNY 574
Query: 509 NKN 517
N N
Sbjct: 575 NNN 577
Score = 25.8 bits (54), Expect = 6.0
Identities = 23/90 (25%), Positives = 28/90 (31%), Gaps = 1/90 (1%)
Frame = +2
Query: 389 NNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDF-GGPKQQNYNKNYGPKTYNNQNCYGNEQ 565
NN N N +N S + G + F G N N N YNN N GN
Sbjct: 525 NNSNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSNSGNYNNNNS-GNNN 583
Query: 566 PEFIPRQSYSPNSVQHSLNDRKLQSKKAKH 655
+ S LN S K +
Sbjct: 584 QQHQQSSSSLQGLASSFLNSSSGNSNKQNY 613
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 33.5 bits (73), Expect = 0.030
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Frame = +2
Query: 299 NDFNEVKNDYNTKNDG-NQNDFGGPKQFRPRNNFNNGNQPP--KKNNFNGDKSPGNMQYG 469
N ++ ++ +N N G N+N+ G P+ R N+NN P N + ++SP N
Sbjct: 315 NKYSHYQHGFNYNNSGNNRNESGHPRFRNSRRNYNNQGAYPTYMSNGRSANQSPRNNPQ- 373
Query: 470 NKNDFGGP------KQQNYNKNYGPKTY---NNQNCYGN-EQPEFIPR 583
N N+ P Q Y + YG Y N YG QP ++P+
Sbjct: 374 NVNNGSTPIQIPVSLQTPYGQVYGQPQYIVDPNMVQYGPILQPGYVPQ 421
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 29.9 bits (64), Expect = 0.37
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 419 KKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNCYGNEQ 565
+ N ++G+ + Y ++ +GG + NY++ G +N+ YG +Q
Sbjct: 4 RDNEYSGNYNGKEDGYNSRGRYGGGYRNNYSRGGGRGGFNDGASYGYDQ 52
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 28.7 bits (61), Expect = 0.85
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = +2
Query: 380 RPRNNFNNGNQPPKK-----NNFNGDKSPGNMQYGN 472
R ++GNQPP++ N F+ P NMQ GN
Sbjct: 569 RNTQTLSSGNQPPQQSGPNPNEFSMSMDPANMQQGN 604
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 28.7 bits (61), Expect = 0.85
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 425 NNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNCYGN 559
N++N D + N YG+ N++G N NYG +Y N YG+
Sbjct: 46 NSYN-DNNNSNSTYGSSNNYGNYGSSN---NYG--SYGASNTYGS 84
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 389 NNFNNGNQP-PKKNNFNGDKSPGNM-QYGNKNDFGGPKQQNYNKNYGPKTYNNQNCY 553
N+ NN N NN+ S N YG N +G N NYG N Y
Sbjct: 49 NDNNNSNSTYGSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYGATNSNGDAGY 105
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 28.7 bits (61), Expect = 0.85
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -2
Query: 601 VWTVRLPRN-KFRLLIPIAILVVVCFRPIILVIILLFRTAKIIFIAILHISW*FVSI 434
V+ V L R F LLIPIA + + + II +I+++ + F+A+ + W F+++
Sbjct: 526 VFLVALTRVVSFALLIPIAFDLAIIPKVIIAIILIIIQGLVFSFMALWSL-WNFITM 581
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 35 NDHTLKNLNSLIREIPTRP*SPSKLINRLSTIKMQYNGFHNQHPIFR 175
N T+ N+N+ P + P+++ NR+S ++ + NQH F+
Sbjct: 221 NHRTMLNINNSSPIKPKKIFKPNEVKNRISRLQKTFADLENQHHSFQ 267
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 521 GPKTYN-NQNCYGNEQPEFIPRQSYSPNSVQHSL 619
GP YN N NC N I ++SY+ +S+ + L
Sbjct: 589 GPIRYNMNSNCTPNSIASIIQKKSYNVSSITYEL 622
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = +2
Query: 416 PKKNNFNGDKSPGNMQYGNKNDFG-GPKQQNYNKNYGPKTYNNQNCYGNEQPEFIPRQSY 592
PK N +N M + N GP Q N Y P + N N EF+ SY
Sbjct: 711 PKTNTYNSRHMAYEMTKSHINVISPGPSLQ-VNAPYTPTSGELGNKVSNPTKEFVSTSSY 769
Query: 593 SP 598
+P
Sbjct: 770 AP 771
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +2
Query: 260 PRPNMMNKNFRPRNDFNE--VKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPK 421
P P+ + N F++ + Y+ +D N +DFGG NF N K
Sbjct: 80 PSPSSFLSDHNNNNLFSDDTISRQYSNTDDINPSDFGGQCAILDSQNFTLSNASTK 135
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 27.1 bits (57), Expect = 2.6
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = +2
Query: 323 DYNTKNDG-NQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQ 499
D +T N N F P Q P N+F+N N N+FN ++ ++ +G Q
Sbjct: 165 DKSTSNSTVTSNQFNKPTQNSPFNSFSNNN-----NSFNNNQQANDI-FGAPTTSAFTSQ 218
Query: 500 QN---YNKNYGPKTYNNQNCYGNEQPEF 574
N +++N ++ N N F
Sbjct: 219 LNASPFSQNTSSNSFTGSNPVQNNPSSF 246
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 85 STVKPFEANKSIVHHQNAVQRVSQSTSDFQASARPQ*TIR*NSI 216
S + PF +KS HH ++ +V +STS+ + S P T+ N +
Sbjct: 534 SPISPFSKSKSHNHHPSS--QVEKSTSNSKGSMLPLDTLYNNKL 575
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 26.6 bits (56), Expect = 3.4
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Frame = +2
Query: 248 KNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN-QPPKK 424
++F R N N ++R + V+ Y +++ ++ + G N F NG QPP
Sbjct: 874 RSFSSRRNNGN-SYRGGHQSYGVRRSYQSQSYSSRQSYTGVT-----NGFANGGVQPPWS 927
Query: 425 NNFNGDKS-------PGNMQYGNKNDFGG-----PKQQNYNKN------YGPKTYNNQNC 550
N N +S G+ YG ++ GG P +Y+ N Y ++YNN N
Sbjct: 928 GNGNFPRSNASYNSRGGHEGYGGRSRGGGYSNGPPAGNHYSSNRGKGYGYQRESYNNNNR 987
Query: 551 YG 556
G
Sbjct: 988 NG 989
>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 538 VVCFRPIILVIILLFRTAKIIF 473
V CF PI+L IIL T IF
Sbjct: 22 VSCFNPILLKIILFLNTIVCIF 43
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 507 ITRIMGLKHTTTRIAMGMSSLNLFLGNLTVQTLF 608
IT++ L +TTR A G + NLF G ++ T F
Sbjct: 474 ITKMTMLASSTTRPATGQTGDNLFRGFSSLSTRF 507
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = +3
Query: 405 VTNHQRKTTLMETNHQEICNMAIKMILAVLNNKIITRIMGLKHTTTRIAMGMSSLNLF 578
+ HQRKT + N C M ++++ + +N + + L + G+ L L+
Sbjct: 598 IREHQRKTFCVGLNWSYTCEMLLEIVDCINDNGLAQIFLALTQDYKNSSSGIPDLCLW 655
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 190 AVWLRPENRMLIVKPVVLHFDGG 122
+VWL N M P++LH GG
Sbjct: 105 SVWLAKVNGMTKSDPIILHLHGG 127
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 6.0
Identities = 24/93 (25%), Positives = 37/93 (39%)
Frame = +2
Query: 299 NDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKN 478
+ NE KND TK G Q N F NQ + N + ++ +
Sbjct: 260 DSLNEWKNDTLTKWHNRVQAVQGISQ---SNKFKALNQSIVQQIENSMINKKDLVERTRI 316
Query: 479 DFGGPKQQNYNKNYGPKTYNNQNCYGNEQPEFI 577
D+ P NK + P+ YN+ + Y + +FI
Sbjct: 317 DYSDPN----NKTFNPEIYNDTDFYQSLLKDFI 345
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +2
Query: 260 PRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ 412
P+P + P N+ N +++ N N+ Q+ P F N+GNQ
Sbjct: 227 PKPQSVPTTTSPNNENNALRSTANVINNTRQSTATSPSMFAG----NSGNQ 273
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 6.0
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = -2
Query: 265 SWSKVFRSS-KIRKTFNVWNFTE-LFIAVWLRPENRMLIV--KPVVLHFDGGQSIY*LRR 98
SW + SS + RK V T L+ W P +I+ V L G +S+Y R
Sbjct: 397 SWIFIAVSSLRFRKALRVQGKTHRLYFPNWTYPVGPYIIILLNGVFLFLQGYKSLYPFRL 456
Query: 97 ALRSSWYL 74
+L S+Y+
Sbjct: 457 SLFVSYYM 464
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 305 FNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKN 427
F E N Y+T NDGN ++ + + +N +P N
Sbjct: 818 FLENANPYSTNNDGNPSNNTSDVEVNETSMNDNSEEPISSN 858
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 314 VKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 409
VKND D N +F QF+ RN G+
Sbjct: 9 VKNDKENFEDPNATNFESVSQFKIRNVIGKGS 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,699
Number of Sequences: 5004
Number of extensions: 67336
Number of successful extensions: 266
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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