Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1784
         (689 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   1.3  
U61152-1|AAB41307.1|   45|Tribolium castaneum TATH2 protein.           23   2.4  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   4.1  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    22   4.1  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    22   4.1  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   4.1  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.5  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 84  CCLSSSGASESPCRTERSCV 25
           C +++   S +PCR   SCV
Sbjct: 103 CNINTDDCSPNPCRNNGSCV 122


>U61152-1|AAB41307.1|   45|Tribolium castaneum TATH2 protein.
          Length = 45

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 375 IPSLDAGTQISGLETLE 425
           IPSLDA  ++S  ETL+
Sbjct: 24  IPSLDADHKLSKFETLQ 40


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 192 WDDKQQVQAFIENN 151
           WDD+QQV   ++ N
Sbjct: 314 WDDEQQVPHIVKGN 327


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 192 WDDKQQVQAFIENN 151
           WDD+QQV   ++ N
Sbjct: 315 WDDEQQVPHIVKGN 328


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 192 WDDKQQVQAFIENN 151
           WDD+QQV   ++ N
Sbjct: 315 WDDEQQVPHIVKGN 328


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 525 WPTRHQQPSPSAGVQTS 575
           +P+  Q P PS GV++S
Sbjct: 14  YPSTDQNPYPSIGVESS 30


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -3

Query: 159 ENNTCKIRIVNNIVPPRYLAIKTLRCCLSSSGASESP 49
           + NTC I    N  PP   A+  L  C  S   +  P
Sbjct: 147 DENTCDIDNDPNRAPPCDPAVCVLPDCFCSEDGTTIP 183


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,373
Number of Sequences: 336
Number of extensions: 2966
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)