Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1784
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    29   0.84 
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    26   5.9  
SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    25   7.8  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   7.8  

>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 181 TTGASIHRKQHVQDKNRKQHRPTTIPC 101
           T+G+S H K+  Q   +K H+P + PC
Sbjct: 72  TSGSSGHTKRRSQTSGKKTHQPYSGPC 98


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -2

Query: 181 TTGASIHRKQHVQDKNRKQHRPTTIPCYKNAPLLSLELRSERVAVSDGTLLR 26
           +T A++H+ Q   D    +H P   P  KN+ L    + ++RV V   +L++
Sbjct: 418 STMAALHKSQRSHDLAANEHAPILNP--KNSALNPRLVTNDRVKVKSPSLIQ 467


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 142 DKNRKQHRPTTIPCYKNAPL 83
           D+  +QHR   + CYKN P+
Sbjct: 548 DEGVRQHREHMLKCYKNNPV 567


>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 165 MLAPVVCRPIFISHELMVYKNTRRHGHPAHD 257
           ML+PV+C P+   +++ VY++  ++    HD
Sbjct: 180 MLSPVLCNPLDFGYDI-VYESATKYLSGHHD 209


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 160 RKQHVQDKNRKQHRPTTIPCYKNAPLLS 77
           R+   Q    +Q +PTTIP   N P+L+
Sbjct: 523 RQPSYQGMQFEQQQPTTIPLQPNIPVLN 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,601
Number of Sequences: 5004
Number of extensions: 51489
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)