Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1784
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891...    31   1.1  
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730...    28   8.0  
11_04_0274 - 15667178-15667444,15668352-15668678,15669430-156695...    28   8.0  
10_07_0182 - 13887932-13888402                                         28   8.0  
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    28   8.0  

>08_02_0269 +
           15087481-15087893,15087978-15088074,15089068-15089112,
           15089281-15089492,15090809-15090911,15091002-15091097,
           15091405-15091473,15093341-15093588,15093640-15093759,
           15093847-15094284,15094503-15094620,15095262-15095303,
           15097099-15097161,15097365-15097475,15097730-15097801,
           15097875-15097993,15099682-15099745,15100238-15101860
          Length = 1350

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 363 MSFEIPSLDAGTQISGLETLEYQNNQASTP 452
           + FE+P +D   ++SG +T+E +  Q  TP
Sbjct: 562 LQFEVPLVDVSARLSGAKTVEGKEGQPGTP 591


>12_01_0797 +
           7300370-7300506,7300682-7300798,7301903-7302443,
           7302885-7304042,7304133-7304291,7304397-7304504,
           7305045-7305304,7305936-7306101,7307025-7307050,
           7307318-7307402,7307486-7307695,7308815-7308872,
           7308964-7309037,7309323-7309373,7309576-7309664,
           7310027-7310104,7310164-7310269
          Length = 1140

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 472 VGLSLNTGVEAWLFWYS 422
           VG+  NT  EAW+FW S
Sbjct: 96  VGMEFNTVDEAWMFWVS 112


>11_04_0274 -
           15667178-15667444,15668352-15668678,15669430-15669563,
           15669669-15669726,15669842-15669961,15670814-15670876,
           15671388-15671539,15673002-15673116,15673907-15673981,
           15674474-15674538,15675020-15675128
          Length = 494

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -3

Query: 186 DKQQVQAFIENNTCKIRIVNNIVPPRYLAIKTLRCCLSSSGASESPCRTERSCVIYA 16
           D+ + Q +++   CK   V     P+   I T  C LSS G    P   E  C  Y+
Sbjct: 361 DQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRP--GEPICTFYS 415


>10_07_0182 - 13887932-13888402
          Length = 156

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 450 ASRLGCSGILGFQDLKFECQRRG 382
           ++ + CSG+ G++DL FE + RG
Sbjct: 65  SAAVDCSGVAGWEDLSFEGRGRG 87


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 472 VGLSLNTGVEAWLFWYS 422
           VG+  NT  EAW+FW S
Sbjct: 56  VGMEFNTVDEAWMFWVS 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,541,924
Number of Sequences: 37544
Number of extensions: 352084
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)