Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1784
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory ...    29   2.4  
L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degeneri...    29   2.4  
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    28   5.5  

>U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory
           abnormality protein10 protein.
          Length = 724

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 641 WSLESICQRRGLVALDY*GFQA*SLNTSAWAWLLMPCRPDFEHQRVGLV 495
           W L+  C +     +   G    SL  +AW +LL+ C   F +Q V ++
Sbjct: 95  WHLQQFCYKTSSHGIPMLGQAPNSLYRAAWVFLLLICAIQFINQAVAVI 143


>L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degenerin
           protein.
          Length = 724

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 641 WSLESICQRRGLVALDY*GFQA*SLNTSAWAWLLMPCRPDFEHQRVGLV 495
           W L+  C +     +   G    SL  +AW +LL+ C   F +Q V ++
Sbjct: 95  WHLQQFCYKTSSHGIPMLGQAPNSLYRAAWVFLLLICAIQFINQAVAVI 143


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 56  SLAPELERQQRSVFIARYRGGTMLFTILILHVLFSMNACTC-CLS 187
           ++A  +ER   SV I  Y     +F  + L V F + A TC CL+
Sbjct: 144 AVAVAIERLAASVLIDNYESTNKIFIPIALTVFFQIIAITCSCLA 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,384,396
Number of Sequences: 27780
Number of extensions: 289186
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)