Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1783
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    29   0.48 
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    27   2.6  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.9  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.9  

>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 116 ALSQYVSMYLPLDGVNASVAFRARPS 39
           A  QYVS +L +DG+  S+ F  RPS
Sbjct: 354 ATKQYVSCFLKVDGIMRSLYFLPRPS 379


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 522 MRNYNNNNFLVSFVPFTPVLYIFIY 448
           M  +N N+ + + + FTP+LY  +Y
Sbjct: 249 MSKFNQNDLVTTTITFTPLLYAQLY 273


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 191 ISTC*NYSVGRDHSLAS--IFFFKFISALSQYVSMYLPLDGV 72
           I  C N S+   +S A   +FFF    +LS+ V   L +DG+
Sbjct: 127 IDLCPNASLWATNSFAGDIVFFFSHHPSLSKQVFAQLSIDGI 168


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 206 KFKHLMYMCVRTLDLKQKNIELIFQCHVMFLNEWA 310
           K KHL  + V+ LD+    ++   Q    FL +W+
Sbjct: 303 KLKHLGCLAVKMLDIDGIRVDKATQITADFLGDWS 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,268
Number of Sequences: 5004
Number of extensions: 54104
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)