Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1783
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical pr...    36   0.027
AF016414-5|AAG24020.1|  585|Caenorhabditis elegans Hypothetical ...    33   0.15 
U49943-1|AAA93414.1|  113|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U97000-10|AAC47997.1|  530|Caenorhabditis elegans Hypothetical p...    29   4.2  
U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical
           protein F45F2.6 protein.
          Length = 581

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 627 ILLLFFTETSNGIVVRNWNVAIIFIYILCHYKKAPMR-NYNNNNFLVSF 484
           I L FFTET + I V  + +A +F Y+  H+     + +   NNFL SF
Sbjct: 166 IFLCFFTETRHNIYVVKYILAFLFTYLQMHFLCCNSKIDLPKNNFLASF 214


>AF016414-5|AAG24020.1|  585|Caenorhabditis elegans Hypothetical
           protein D1065.1 protein.
          Length = 585

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -1

Query: 687 KLKKLFSSTFKAVFGARIMLILLLFFTETSNGIVVRNWNVAIIFIYILCHY 535
           ++  LF  +  AV    I  ILL FF    NGI V  + +A+ FIY+  H+
Sbjct: 151 RIGTLFFGSMGAVL--YITEILLCFFDTQRNGIYVTKYTLAVAFIYMQMHF 199


>U49943-1|AAA93414.1|  113|Caenorhabditis elegans Hypothetical
           protein EGAP4.1 protein.
          Length = 113

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 541 AQNINKNNCYIPVTDDNAVGCFCEK 615
           A ++  NNCYI   D  A+ C+C +
Sbjct: 69  ANDLTINNCYIDFNDQTALTCYCRR 93


>U97000-10|AAC47997.1|  530|Caenorhabditis elegans Hypothetical
           protein F21F8.11 protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -1

Query: 639 RIMLILLLFFTETSNGIVVRNWNVAIIFIYILCHYKKAPMRNYNNNNF 496
           R ML   +F++   N  V+ N  +A+IF+YI  ++K   M +  +N F
Sbjct: 301 RDMLTSKVFWSLMFNS-VMGNMMIALIFVYIPVYFKDVLMLDVQSNGF 347


>U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical
           protein F45F2.5 protein.
          Length = 556

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 627 ILLLFFTETSNGIVVRNWNVAIIFIYILCHY 535
           ILL FF    +GI V  + +A+IF ++  H+
Sbjct: 149 ILLCFFDNQRHGIYVVKYILAVIFTFMQMHF 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,640,560
Number of Sequences: 27780
Number of extensions: 300240
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)