Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1782
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.62 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.3  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   5.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.8  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   5.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.8  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 635 VFYKVVIHYFILSSIVFAGHAM*IIC 558
           +F+ + I+YF  + I+F  H + ++C
Sbjct: 140 LFFLLCIYYFYCAFIIFTVHLLFLLC 165



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = -1

Query: 668 YAVATLFVNNNVFYKVVI-----HYFILSSIVFAGHAM*IIC*VIFLLLY 534
           Y+   +F  + +FY V+I     +YF  + I+F  H + ++C   F  ++
Sbjct: 216 YSAFIIFTIHLLFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMH 265



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -1

Query: 617 IHYFILSSIVFAGHAM*IIC*VIFLL 540
           ++YF  + I+F  H + ++C   F++
Sbjct: 113 VYYFYYAFIIFTVHLLFLLCIYYFVV 138


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 437 NRFSTFGAYSIQTNKQIFPLYNISIEKYR 351
           NRF T G   +  N +   +YN+ IE  +
Sbjct: 416 NRFGTSGLAWLYLNNEGSLVYNVQIENLK 444


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 35  EAINHITDV--NFAYIRASDNVTALFTKTNEIENSTSTVKSLFVANKKHP 178
           EA+  I ++  NF Y  AS  +  L+TK+     S + V+S       HP
Sbjct: 53  EALKKIYNIQNNFEYDTASLPLPGLYTKSANTIRSFTHVESPIDEKFVHP 102


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 13  HPRHAEAGSHQPHHRCQ 63
           HP+H     HQPHH+ Q
Sbjct: 175 HPQH-----HQPHHQQQ 186


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 374 NISIEKYR*YLVFYTKHCLIIHKICCLFPRLVASKSLVLLL 252
           +IS  K+   ++   K C + H++  L  +L A+  L+LLL
Sbjct: 199 SISKYKHAELVMPLCKSCDLHHRLSKLIKQLNATYGLILLL 239


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 13  HPRHAEAGSHQPHHRCQ 63
           HP+H     HQPHH+ Q
Sbjct: 177 HPQH-----HQPHHQQQ 188


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,801
Number of Sequences: 336
Number of extensions: 3576
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)