Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1782
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   6.3  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    26   6.3  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.3  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = +3

Query: 519 LTKTSIKK*KNYLTYYLHRVPCENY-***NKIMYYDFVEHIIV----YKKCRDSICLTIM 683
           LTKT++K+    L    H  PC  +    N+I  YD +  ++V    +    D   LT +
Sbjct: 651 LTKTNVKQFGRLLAKVCHSNPCTVFSIALNQIETYDNLVEVVVDSARFITALDFDALTFI 710

Query: 684 VMSAVSGSF 710
           ++S+ S  F
Sbjct: 711 ILSSFSNEF 719


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -3

Query: 510 IFFKKIIAHFTRQ*CSFQKVKYFFKSVQYFRSLF----NTNKQTNLSSL 376
           IFF   I  +    C F+ ++   KS+Q+F  L     NTNK   L S+
Sbjct: 202 IFFS-YIRKYDAYWCLFEDLEKPLKSIQFFTGLIDLLDNTNKHLTLRSI 249


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 559 VR*FFYFFIEVLVRIPN 509
           VR + YFF+++ V IPN
Sbjct: 281 VRMYLYFFLQIAVAIPN 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,943
Number of Sequences: 5004
Number of extensions: 56349
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)