Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1781
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   7.4  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   9.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.8  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   9.8  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    25   9.8  

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +3

Query: 141 RAHPLNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRGRPTDGSSRR 302
           R  PLN SP+ L P S+         + G+    + T    PP  R T G + R
Sbjct: 337 RRSPLN-SPSQLDPISNENESDTDDSNTGLRNRTSPTAAPPPPSRRKTGGLNTR 389


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 150 PLNDSPALLHPTSDLRPGSEPVQSRGVPA 236
           P N++PA    ++  RP S P  S  VPA
Sbjct: 258 PANETPASSSSSAKARPVSVPDMSSPVPA 286


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 165 PALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRGRPTDGS 293
           PA+ HP +      +P+    VPA N       PP+  P +G+
Sbjct: 227 PAVNHPMA-----GQPIAIAPVPAPNQAALPPIPPQALPANGT 264


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 207 EPVQSRGVPAVNTTTRHAAPP--RGRPTDGSSRR*STTND 320
           +P  S+   A NTT+R   PP  R R   G++    TT+D
Sbjct: 445 KPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSRTTSD 484


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 210 PVQSR--GVPAVNTTT-RHAAPPRGRPTDGSSRR 302
           P+Q +  G+P   +T+ +H  PPR RP    SR+
Sbjct: 182 PLQRKLMGLPEGGSTSGKHLTPPRYRPNFSPSRK 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,965
Number of Sequences: 5004
Number of extensions: 39903
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)