Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1781
(552 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39999-13|AAA81111.1| 320|Caenorhabditis elegans Hypothetical p... 29 2.2
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 29 2.9
Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical pr... 28 5.1
U40801-5|AAO91727.1| 777|Caenorhabditis elegans Hypothetical pr... 28 5.1
U40801-4|AAO91728.1| 873|Caenorhabditis elegans Hypothetical pr... 28 5.1
U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical pr... 28 5.1
U21308-15|AAB93316.2| 412|Caenorhabditis elegans Hypothetical p... 27 6.8
U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical pr... 27 6.8
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z35637-6|CAA84685.1| 341|Caenorhabditis elegans Hypothetical pr... 27 9.0
>U39999-13|AAA81111.1| 320|Caenorhabditis elegans Hypothetical
protein F41G3.2 protein.
Length = 320
Score = 29.1 bits (62), Expect = 2.2
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 223 GGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVRGPYQAARAVPLVFRDTPLGQN 402
G PR+ +P + + P+ + G R+P T VR +Q PL+ R TP+G+N
Sbjct: 160 GSMPRAQRKPGSYQ-PQMHDHRSQDGGYRQPQTETFFVR--HQ-----PLLRRRTPVGRN 211
Query: 403 QPAGSERDTP 432
Q S R P
Sbjct: 212 QLRHSRRSRP 221
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/55 (34%), Positives = 22/55 (40%)
Frame = +3
Query: 150 PLNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRGRPTDGSSRR*STT 314
PL + A L P+ R PV TTTR RPT +RR TT
Sbjct: 326 PLATTRAPLPPSPPPRTSKRPVTQAPTTPRATTTRRPTTTTPRPTPRRTRRPKTT 380
>Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical
protein C48G7.1 protein.
Length = 658
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 90 RLNDLQVLRADRGPKDFRAH-PLNDSPALLHPTS 188
RL+D+ + R+DR + R+H + SP L H TS
Sbjct: 210 RLDDVHISRSDRRSQSVRSHKSVTASPKLGHSTS 243
>U40801-5|AAO91727.1| 777|Caenorhabditis elegans Hypothetical
protein F28E10.1b protein.
Length = 777
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 163 PLHSYTRRPISVRGQNPFRVGGFPRSTLQPDTRRHPEDAR 282
P+ S +R+P+S ++ F +GG RST + R+ PE R
Sbjct: 524 PITSPSRKPVSPEPRHLFVMGG-RRSTTPQEDRKVPEPPR 562
>U40801-4|AAO91728.1| 873|Caenorhabditis elegans Hypothetical
protein F28E10.1c protein.
Length = 873
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 163 PLHSYTRRPISVRGQNPFRVGGFPRSTLQPDTRRHPEDAR 282
P+ S +R+P+S ++ F +GG RST + R+ PE R
Sbjct: 620 PITSPSRKPVSPEPRHLFVMGG-RRSTTPQEDRKVPEPPR 658
>U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical
protein F28E10.1a protein.
Length = 1134
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 163 PLHSYTRRPISVRGQNPFRVGGFPRSTLQPDTRRHPEDAR 282
P+ S +R+P+S ++ F +GG RST + R+ PE R
Sbjct: 666 PITSPSRKPVSPEPRHLFVMGG-RRSTTPQEDRKVPEPPR 704
>U21308-15|AAB93316.2| 412|Caenorhabditis elegans Hypothetical
protein ZK1290.10 protein.
Length = 412
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 235 RSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVRGPYQAAR 360
R++L+P P+ + + R PTTS+ +RGP+ R
Sbjct: 114 RTSLEPPQPSTPQASISSTTTVLIRNPTTSIQQLRGPFDDVR 155
>U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical
protein F32A5.2b protein.
Length = 859
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 207 EPVQSRGVPAVNTTTRHAAPPRGRPTDGSSRR*STTN 317
+PV R +PAV TTR PP T +++ +TT+
Sbjct: 199 QPVTRRPLPAVFFTTRRTFPPPTTTTTTTTQAPATTH 235
>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
protein F32A5.2a protein.
Length = 1000
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 207 EPVQSRGVPAVNTTTRHAAPPRGRPTDGSSRR*STTN 317
+PV R +PAV TTR PP T +++ +TT+
Sbjct: 340 QPVTRRPLPAVFFTTRRTFPPPTTTTTTTTQAPATTH 376
>Z35637-6|CAA84685.1| 341|Caenorhabditis elegans Hypothetical
protein C03C10.1 protein.
Length = 341
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 192 LRPGSEPVQSRGVPAVNTTTRHAAPP 269
L+ ++ QS GVP NTTT+ A P
Sbjct: 300 LKQKAQQSQSSGVPGTNTTTQGATVP 325
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,932,046
Number of Sequences: 27780
Number of extensions: 281566
Number of successful extensions: 763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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