Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1780
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039050-9|AAC47940.1|  499|Caenorhabditis elegans Cytochrome p4...    31   1.1  
U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>AF039050-9|AAC47940.1|  499|Caenorhabditis elegans Cytochrome p450
           family protein34A10 protein.
          Length = 499

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
 Frame = +2

Query: 425 IQTIINGNILRA--QD--IDNKSMATGHSIITKLVLIQSDTLIPKNPTEY 562
           I +I+N N+ R   QD  I  + +A+G  + T++ ++ +D  + KNPTE+
Sbjct: 369 IASILNINLFRKIEQDTEIAGQPLASGCVVTTQMSMLHTDVEVYKNPTEF 418


>U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical
           protein C54G7.4 protein.
          Length = 1199

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 434 IINGNILRAQDIDNKSMATGHSIITKLVLIQSDTLIPKNPTEYCM 568
           I +GN +  Q   N S+    +++   V I+   L P+NPT+ C+
Sbjct: 627 ICDGNSILEQSSVNGSILLFQNLVVTAVNIEKILLTPENPTKTCI 671


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,433,505
Number of Sequences: 27780
Number of extensions: 311378
Number of successful extensions: 590
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)