Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1780
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    26   0.42 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.2  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   6.8  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   6.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.0  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 658 PMFLIKKLMHFFSLVLRL*GFRVRHRLRYVHTIFSWV 548
           P  + KK+ HFF LV  L  F+    L   + IF  V
Sbjct: 236 PDLVGKKITHFFDLVRPLIAFKFHSILNRTNNIFELV 272


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +2

Query: 488 TGHSIITKLVLIQSDTLIPKN 550
           TG+  +T++ +  SDT++P++
Sbjct: 661 TGNMAVTEVTVRFSDTIVPRS 681


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 650 KHGLTQSKKQAIKKYNCPN*LNVSCF 727
           +HG TQ++   + K N  N  +++C+
Sbjct: 48  EHGTTQAQIDDVDKGNLVNEPSITCY 73


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 650 KHGLTQSKKQAIKKYNCPN*LNVSCF 727
           +HG TQ++   + K N  N  +++C+
Sbjct: 48  EHGTTQAQIDDVDKGNLVNEPSITCY 73


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 133 DVSNIFVLFNVVITNFIVCWKLNHGMIS 50
           D S I   + + I  F   W L+ G+I+
Sbjct: 121 DCSGIVSAYKIAIDKFDRLWVLDSGLIN 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,677
Number of Sequences: 438
Number of extensions: 3790
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)