Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1779
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    77   3e-15
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    29   0.88 
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    28   1.5  
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    27   2.0  
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    27   2.0  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.6  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   3.6  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    26   4.7  
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    26   4.7  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    26   4.7  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    26   6.2  
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.2  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 41/104 (39%), Positives = 59/104 (56%)
 Frame = -1

Query: 622 WYVASMFRYTISLHFTWLVNSAAHLWGNKPYDQYIGATDNKTVAICALGEGWHNYHHVFP 443
           ++ A + R     H T+ VNS AHL G++P+D    A ++   A+  LGEG HNYHH FP
Sbjct: 232 YFYAGVCRLVFVHHATFCVNSLAHLIGSQPFDDTNSARNHFITALVTLGEGNHNYHHAFP 291

Query: 442 WDYKAAELGDYSTNLSTALIDIAAKYGLAYDLKTVSEKMIRNRI 311
            DY+   L  Y  + +   I IA+ +GLAY+L T  +  I+  I
Sbjct: 292 NDYRNG-LRWYEYDPTKIFIYIASLFGLAYNLNTFPDNEIQKGI 334


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 503 QNCGDLCFRRGLAQLSSRISLGLQSGRARRLQHQFINRLN 384
           Q+  +    R +  L S+I+L +Q+  A+  QH+F  RLN
Sbjct: 64  QSKQNFVLERDVRYLDSKIALLIQNRMAQEEQHEFAKRLN 103


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 673  CHCTFPVY-FWNENPWSSWYVASMFRYTISLHFTWLVNSAAHLWGNKPYDQY 521
            C+C   VY F+   P++  Y  +++     + + W  + A   W N  YD Y
Sbjct: 1091 CNCKAIVYQFFFRVPYTDTYELNVYNVD-DVFYGWFGDKAISGWSNTNYDAY 1141


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 403 NLSTALIDIAAKYGLAYDLKTVSEKMIRNRINRTGDGTHPWA-KQKAELE 257
           N + ALI I A+     ++K++SE +    IN     ++ +A K+K ELE
Sbjct: 147 NQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELE 196


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 403 NLSTALIDIAAKYGLAYDLKTVSEKMIRNRINRTGDGTHPWA-KQKAELE 257
           N + ALI I A+     ++K++SE +    IN     ++ +A K+K ELE
Sbjct: 147 NQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELE 196


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = -1

Query: 676 YCHCTFPVY-FWNENPWSSWYVASMFRYTISLHFTWLVNSAAHLWGNKPYDQYIGATDNK 500
           YC C   VY F+   P +  Y   +      + F W  + A   W N  +D Y    ++ 
Sbjct: 275 YCACKVIVYQFFLRIPETDTYTL-VVNNVDDVFFGWFGDKAISGWSNNNFDAYSYWHESP 333

Query: 499 TVAICALGEG 470
            + +  +G G
Sbjct: 334 NMGLGTVGMG 343


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = -1

Query: 676 YCHCTFPVY-FWNENPWSSWYVASMFRYTISLHFTWLVNSAAHLWGNKPYDQYIGATDNK 500
           YC C   VY F+   P +  Y   +      + F W  + A   W N  +D Y    ++ 
Sbjct: 275 YCACKVIVYQFFLRIPETDTYTL-VVNNVDDVFFGWFGDKAISGWSNNNFDAYSYWHESP 333

Query: 499 TVAICALGEG 470
            + +  +G G
Sbjct: 334 NMGLGTVGMG 343


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 139 ELLISSHSFCEQFPPISYHRLTCLYRPS 222
           EL IS H F  +   ++Y R  C Y PS
Sbjct: 41  ELNISGHFFRNKLKYLAYLRKACRYNPS 68


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 139 ELLISSHSFCEQFPPISYHRLTCLYRPS 222
           EL IS H F  +   ++Y R  C Y PS
Sbjct: 41  ELNISGHFFRNKLKYLAYLRKACRYNPS 68


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 139 ELLISSHSFCEQFPPISYHRLTCLYRPS 222
           EL IS H F  +   ++Y R  C Y PS
Sbjct: 41  ELNISGHFFRNKLKYLAYLRKACRYNPS 68


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 565 NSAAHLWGNKPYDQYIGATDNKTVAICALGEGWHNYH 455
           N  AH+      D+Y G  D KTV    + E  HN H
Sbjct: 173 NQGAHIELRLRTDRYDGFRDYKTVKSTLIHELTHNVH 209


>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 505 NKTVAICALG-EGWHNYHHVFPWDYKA 428
           N+ +A+C +  +G+H+Y   F W+++A
Sbjct: 154 NRPLALCRIYVDGFHSYMFQFVWNHQA 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,885
Number of Sequences: 5004
Number of extensions: 65800
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)