Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1778
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1166 - 35059844-35060019,35060203-35060590,35061048-35061305     29   2.8  
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130...    28   8.6  
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743...    28   8.6  

>01_06_1166 - 35059844-35060019,35060203-35060590,35061048-35061305
          Length = 273

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 427 LLHTYSTQATKQPKAAVGAFKPLKHRPPF 513
           L+H  +  A+  P A VGAF PL    PF
Sbjct: 5   LVHAAAASASPAPAARVGAFHPLASSSPF 33


>08_01_0162 -
           1302497-1302787,1304608-1305271,1305380-1306927,
           1307360-1308768
          Length = 1303

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 591 WVEIQIRKYILRSTALGRASYLARVALFFT 680
           W++I   +Y  R  + GRASY AR  L ++
Sbjct: 60  WIDISANRYGHRGHSKGRASYSARPMLLWS 89


>03_04_0053 +
           16873735-16873927,16874011-16874162,16874286-16874380,
           16874704-16874818,16875054-16875343,16875436-16875585,
           16876478-16876598,16876671-16876942,16877466-16877937
          Length = 619

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 620 NIFPNLNLDPVRRSSEKLSGLCLWVRLLVE--IDEFNENGGRCLRGLK 483
           +I PN+ +D VR +S   S    W R +VE      +E+ G   R LK
Sbjct: 225 SIPPNIFVDVVRSASRTASSQDGWTRFIVEKPFGRDSESSGELTRNLK 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,436,812
Number of Sequences: 37544
Number of extensions: 369702
Number of successful extensions: 745
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)