Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1778
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.72 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.9  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   8.9  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   8.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 319 SHLCFFSILNSLRAHRGHYNI 257
           +H+CFFS+L      +G Y +
Sbjct: 390 THVCFFSLLRDAFTSKGEYRM 410


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 492  PQAPATVLVELVDLDKQPNPQTQPTEFLARSSHWVEIQIRKYI 620
            P    T+   LV+L    NP +   +FL   S WV     K +
Sbjct: 906  PVWQVTLNARLVELSLGSNPWSCRCKFLQELSSWVSDNAHKVV 948


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 112 YTIHSCEQNAGFYLSDI*SYIVY 44
           Y +HSCE   GF+   I   I Y
Sbjct: 79  YGVHSCEGCKGFFRRSIQQKIQY 101


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding
          protein ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 97 CEQNAGFYLSDI 62
          C Q AGF LSD+
Sbjct: 26 CSQKAGFDLSDL 37


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding
          protein ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 97 CEQNAGFYLSDI 62
          C Q AGF LSD+
Sbjct: 26 CSQKAGFDLSDL 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,388
Number of Sequences: 438
Number of extensions: 3952
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)