Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1777
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    27   1.4  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   3.3  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   5.8  
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    25   7.7  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    25   7.7  

>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 183 GTDEKAIIDGALPPRHLCNASRSHETFKTNYGKDLISELNS 305
           G D KAI    + P  +C      + F+  YG  L+S + S
Sbjct: 527 GIDNKAIPSYLIDPSGVCKRPEYSDGFELLYGSALVSPIKS 567


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 302 VEFANQVLAIVSLEGLMRSRGVAQMPRRQ-STVDDSLLIGAEALHSLVKGLGIRDRVERL 126
           V   + +   + L   M+S   A M R + S   DS+     + HS+ KG  IRD + RL
Sbjct: 469 VNMLDNLYNYIPLFNRMQSILRANMFRNEWSNFLDSVQSFPVSFHSICKGRLIRDSINRL 528

Query: 125 RG 120
            G
Sbjct: 529 NG 530


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 380  ELLSVEVGQGSHQCEDDIFQVAGEFTVEFANQVLAIVSLEGLMRS 246
            E  S E+     Q +DD+  VA + ++E     L I+ L  +MRS
Sbjct: 1428 EKASFEIPFPEEQIDDDVSPVAQDSSLEELLISLDIIDLTSVMRS 1472


>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
 Frame = +3

Query: 111 TVYPPEPFNPVADAKTLHKAM----KGFGTDEKAIIDGALPPRHLCNAS 245
           TV+P E   PV     LH  +      F   E AI+D  L    LCN S
Sbjct: 174 TVHPVEERVPVP-LSILHMPICVTFSFFNNGELAIVDATLEEEDLCNGS 221


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 117 YPPEPFNPVADAKTLHKAMKGFGTDEKAIID 209
           YP    +P  D  T+ +  KG   +EK +ID
Sbjct: 3   YPSFHEDPTKDESTVAEQRKGQSNEEKPLID 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,932
Number of Sequences: 5004
Number of extensions: 38626
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)